Publications from our department are a true reflection of the impact of our science, the wide range of disciplines encompassed by our research, and the many animal models employed by our labs. See if any of the recent publications featured below align with your research interests.

Featured publications

Publications by year


A conserved role for sleep in supporting Spatial Learning in Drosophila

Melnattur, K., Kirszenblat, L., Morgan, E., Militchin, V., Sakran, B., English, D., Patel, R., Chan, D., van Swinderen, B. & Shaw, P. J., Mar 12 2021, In: Sleep. 44, 3

A Paradoxical Kind of Sleep in Drosophila melanogaster

Tainton-Heap, L. A. L., Kirszenblat, L. C., Notaras, E. T., Grabowska, M. J., Jeans, R., Feng, K., Shaw, P. J. & van Swinderen, B., Feb 8 2021, In: Current Biology. 31, 3, p. 578-590.e6

Cell-type-specific asynchronous modulation of PKA by dopamine in learning

Lee, S. J., Lodder, B., Chen, Y., Patriarchi, T., Tian, L. & Sabatini, B. L., Feb 18 2021, In: Nature. 590, 7846, p. 451-456 6 p.

Cortical Regions Activated by Spectrally Degraded Speech in Adults With Single Sided Deafness or Bilateral Normal Hearing

Burton, H., Reeder, R. M., Holden, T., Agato, A. & Firszt, J. B., Apr 7 2021, In: Frontiers in Neuroscience. 15, 618326.

Cryo-EM structure of a proton-activated chloride channel TMEM206

Deng, Z., Zhao, Y., Feng, J., Zhang, J., Zhao, H., Rau, M. J., Fitzpatrick, J. A. J.Hu, H. & Yuan, P., Feb 24 2021, In: Science Advances. 7, 9, eabe5983.

Cryo-EM structure of the Rous sarcoma virus octameric cleaved synaptic complex intasome

Pandey, K. K., Bera, S., Shi, K., Rau, M. J., Oleru, A. V., Fitzpatrick, J. A. J., Engelman, A. N., Aihara, H. & Grandgenett, D. P., Dec 2021, In: Communications Biology. 4, 1, 330.

Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs

Cates, K., McCoy, M. J., Kwon, J. S., Liu, Y., Abernathy, D. G., Zhang, B., Liu, S., Gontarz, P., Kim, W. K., Chen, S., Kong, W., Ho, J. N., Burbach, K. F., Gabel, H. W.Morris, S. A. & Yoo, A. S., Jan 7 2021, In: Cell Stem Cell. 28, 1, p. 127-140.e9

Functional characterization of the dural sinuses as a neuroimmune interface

Rustenhoven, J., Drieu, A., Mamuladze, T., de Lima, K. A., Dykstra, T., Wall, M., Papadopoulos, Z., Kanamori, M., Salvador, A. F., Baker, W., Lemieux, M., Da Mesquita, S., Cugurra, A., Fitzpatrick, J., Sviben, S., Kossina, R., Bayguinov, P., Townsend, R. R., Zhang, Q., Erdmann-Gilmore, P., Smirnov, I., Beatriz-Lopes, M., Herz, J.Kipnis, J., Feb 18 2021, In: Cell. 184, 4, p. 1000-1016.e27

In Vivo Gene Delivery of STC2 Promotes Axon Regeneration in Sciatic Nerves

Jeon, Y., Shin, J. E., Kwon, M., Cho, E., Cavalli, V. & Cho, Y., Feb 2021, In: Molecular Neurobiology. 58, 2, p. 750-760 11 p.

Modelling white matter in gyral blades as a continuous vector field

Cottaar, M., Bastiani, M., Boddu, N., Glasser, M. F., Haber, S., Van Essen, D. C., Sotiropoulos, S. N. & Jbabdi, S., Feb 15 2021, In: NeuroImage. 227, 117693.

nNOS regulates ciliated cell polarity, ciliary beat frequency, and directional flow in mouse trachea

Mikhailik, A., Michurina, T. V., Dikranian, K., Hearn, S., Maxakov, V. I., Siller, S. S., Takemaru, K. I., Enikolopov, G. & Peunova, N., Mar 2 2021, In: Life Science Alliance. 4, 5, e202000981.

Osteolineage depletion of mitofusin2 enhances cortical bone formation in female mice

Zarei, A., Ballard, A., Cox, L., Bayguinov, P., Harris, T., Davis, J. L., Roper, P., Fitzpatrick, J.Faccio, R. & Veis, D. J., Jul 2021, In: Bone. 148, 115941.

Pancreatic β-cell–specific deletion of VPS41 causes diabetes due to defects in insulin secretion

Burns, C. H., Yau, B., Rodriguez, A., Triplett, J., Maslar, D., An, Y. S., van der Welle, R. E. N., Kossina, R. G., Fisher, M. R., Strout, G. W., Bayguinov, P. O., Veenendaal, T., Chitayat, D., Fitzpatrick, J. A. J., Klumperman, J., Kebede, M. A. & Asensio, C. S., Feb 1 2021, In: Diabetes. 70, 2, p. 436-448 13 p.

Size-Dependent Effective Diffusivity in Healthy Human and Porcine Joint Synovium

Guang, Y., Davis, A. L., McGrath, T. M., Pham, C. T. N.Fitzpatrick, J. A. J. & Setton, L. A., Apr 2021, In: Annals of biomedical engineering. 49, 4, p. 1245-1256 12 p.

The Kinase Specificity of Protein Kinase Inhibitor Peptide

Chen, Y. & Sabatini, B. L., Jan 29 2021, In: Frontiers in Pharmacology. 12, 632815.

The nonhuman primate neuroimaging and neuroanatomy project

Hayashi, T., Hou, Y., Glasser, M. F., Autio, J. A., Knoblauch, K., Inoue-Murayama, M., Coalson, T., Yacoub, E., Smith, S., Kennedy, H. & Van Essen, D. C., Apr 1 2021, In: NeuroImage. 229, 117726.

Ascending dorsal column sensory neurons respond to spinal cord injury and downregulate genes related to lipid metabolism

Ewan, E. E., Avraham, O., Carlin, D., Gonçalves, T. M., Zhao, G. & Cavalli, V., Dec 2021, In: Scientific reports. 11, 1, 374.

Striatal dopamine mediates hallucination-like perception in mice

Schmack, K., Bosc ,M., Ott, T., Sturgill J.F., Kepecs, A., Apr 2 2021; In: Science. 372(6537).

SARS-CoV-2 infects human engineered heart tissues and models COVID-19 myocarditis

Bailey, A.L., Dmytrenko, O., Greenberg, L., Bredemeyer, A.L., Ma, P., Liu, J., Penna, V., Winkler, E.S., Sviben, S., Brooks, E., Nair, A.P., Heck, K.A., Rali, A.S., Simpson, L., Saririan, M., Hobohm, D., Stump, W.T., Fitzpatrick, J.A., Xie, X., Zhang, X., Shi, P., Hinson, J.T., Gi, W., Schmidt, C., Leuschner, F., Lin, C., Diamond, M.S., Greenberg, M.J., Lavine, K.J., In: JACC: Basic to Translational Science, 6 (4), pp. 331-345.

Verbal Adynamia and Conceptualization in Partial Rhombencephalosynapsis and Corpus Callosum Dysgenesis

Barker, M. S., Knight, J. L., Dean, R. J., Mandelstam, S., Richards, L. J. & Robinson, G. A., Mar 3 2021, In: Cognitive and Behavioral Neurology. 34, 1, p. 38-52 15 p.


A 2020 view of tension-based cortical morphogenesis

Van Essen, D. C., Dec 29 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 52, p. 32868-32879 12 p.

Accelerating the Evolution of Nonhuman Primate Neuroimaging

The PRIMatE Data Exchange (PRIME-DE) Global Collaboration Workshop and Consortium, Feb 19 2020, In: Neuron. 105, 4, p. 600-603 4 p.

A Dedicated Evolutionarily Conserved Molecular Network Licenses Differentiated Cells to Return to the Cell Cycle

Miao, Z. F., Lewis, M. A., Cho, C. J., Adkins-Threats, M., Park, D., Brown, J. W., Sun, J. X., Burclaff, J. R., Kennedy, S., Lu, J., Mahar, M., Vietor, I., Huber, L. A., Davidson, N. O.Cavalli, V.Rubin, D. C., Wang, Z. N. & Mills, J. C., Oct 26 2020, In: Developmental cell. 55, 2, p. 178-194.e7

A Domain-General Cognitive Core Defined in Multimodally Parcellated Human Cortex

Assem, M., Glasser, M. F., Van Essen, D. C. & Duncan, J., Jun 30 2020, In: Cerebral Cortex. 30, 8, p. 4361-4380 20 p.

An Open Resource for Non-human Primate Optogenetics

Tremblay, S., Acker, L., Afraz, A., Albaugh, D. L., Amita, H., Andrei, A. R., Angelucci, A., Aschner, A., Balan, P. F., Basso, M. A., Benvenuti, G., Bohlen, M. O., Caiola, M. J., Calcedo, R., Cavanaugh, J., Chen, Y., Chen, S., Chernov, M. M., Clark, A. M., Dai, J. & 78 others, , Dec 23 2020, In: Neuron. 108, 6, p. 1075-1090.e6

Anterior Cingulate Cortex and the Control of Dynamic Behavior in Primates

Monosov, I. E., Haber, S. N., Leuthardt, E. C. & Jezzini, A., Dec 7 2020, In: Current Biology. 30, 23, p. R1442-R1454

Assaying three-dimensional cellular architecture using X-ray tomographic and correlated imaging approaches

Bayguinov, P. O., Fisher, M. R. & Fitzpatrick, J. A. J., Nov 13 2020, In: Journal of Biological Chemistry. 295, 46, p. 15782-15793 12 p.

Astrocyte deletion of α2-Na/K ATPase triggers episodic motor paralysis in mice via a metabolic pathway

Smith, S. E., Chen, X., Brier, L. M., Bumstead, J. R., Rensing, N. R., Ringel, A. E., Shin, H., Oldenborg, A., Crowley, J. R., Bice, A. R., Dikranian, K.Ippolito, J. E., Haigis, M. C., Papouin, T.Zhao, G.Wong, M.Culver, J. P. & Bonni, A., Dec 2020, In: Nature communications. 11, 1, 6164.

Cellular diversity of the regenerating caudal fin

Hou, Y., Lee, H. J., Chen, Y., Ge, J., Osman, F. O. I., McAdow, A. R., Mokalled, M. H., Johnson, S. L., Zhao, G. & Wang, T., Aug 2020, In: Science Advances. 6, 33, eaba2084.

Central Vestibular Tuning Arises from Patterned Convergence of Otolith Afferents

Liu, Z., Kimura, Y., Higashijima, S. I., Hildebrand, D. G. C., Morgan, J. L. & Bagnall, M. W., Nov 25 2020, In: Neuron. 108, 4, p. 748-762.e4

Chemical effects of diceCT staining protocols on fluid-preserved avian specimens

Early, C. M., Morhardt, A. C., Cleland, T. P., Milensky, C. M., Kavich, G. M. & James, H. F., Sep 2020, In: PloS one. 15, 9 September, e0238783.

Coupling of Ca2+and voltage activation in BK channels through the aB helix/voltage sensor interface

Geng, Y., Deng, Z., Zhang, G., Budelli, G., Butler, A., Yuan, P., Cui, J., Salkoff, L. & Magleby, K. L., Jun 23 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14512-14521 10 p.

Cryo-EM structure of a neuronal functional amyloid implicated in memory persistence in Drosophila

Hervas, R., Rau, M. J., Park, Y., Zhang, W., Murzin, A. G., Fitzpatrick, J. A. J., Scheres, S. H. W. & Si, K., Mar 13 2020, In: Science. 367, 6483, p. 1230-1234 5 p.

Cryo-EM structures of the ATP release channel pannexin 1

Deng, Z., He, Z., Maksaev, G., Bitter, R. M., Rau, M., Fitzpatrick, J. A. J. & Yuan, P., Apr 1 2020, In: Nature Structural and Molecular Biology. 27, 4, p. 373-381 9 p.

Disrupting flight increases sleep and identifies a novel sleep-promoting pathway in Drosophila

Melnattur, K., Zhang, B. & Shaw, P. J., May 2020, In: Science Advances. 6, 19, eaaz2166.

DNMT3A Haploinsufficiency Results in Behavioral Deficits and Global Epigenomic Dysregulation Shared across Neurodevelopmental Disorders

Christian, D. L., Wu, D. Y., Martin, J. R., Moore, J. R., Liu, Y. R., Clemens, A. W., Nettles, S. A., Kirkland, N. M., Papouin, T., Hill, C. A., Wozniak, D. F.Dougherty, J. D. & Gabel, H. W., Nov 24 2020, In: Cell Reports. 33, 8, 108416.

Efficient transgenesis in caenorhabditis elegans using flp recombinase-mediated cassette exchange

Nonet, M. L., Aug 2020, In: Genetics. 215, 4, p. 903-921 19 p.

Emerging Insights into the Distinctive Neuronal Methylome

Clemens, A. W. & Gabel, H. W., Nov 2020, In: Trends in Genetics. 36, 11, p. 816-832 17 p.

Erratum: Local Perturbations of Cortical Excitability Propagate Differentially Through Large-Scale Functional Networks (Cerebral Cortex (2020) DOI: 10.1093/cercor/bhz314)

Rosenthal, Z. P., Raut, R. V., Yan, P., Koko, D., Kraft, A. W., Czerniewski, L., Acland, B., Mitra, A., Snyder, L. H.Bauer, A. Q.Snyder, A. Z.Culver, J. P.Raichle, M. E. & Lee, J. M., May 14 2020, In: Cerebral Cortex. 30, 5, p. 3431 1 p.

Erratum: International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts (Neuron (2020) 105(2) (212–216), (S0896627320300027), (10.1016/j.neuron.2020.01.002))

Adams, A., Albin, S., Amunts, K., Asakawa, T., Bernard, A., Bjaalie, J. G., Chakli, K., Deshler, J. O., De Koninck, Y., Ebell, C. J., Egan, G., Hale, M. E., Häusser, M., Jeong, S. J., Illes, J., Lanyon, L., Li, P., Li, Y., Magistretti, P., McMahon, A. & 21 others, , Mar 4 2020, In: Neuron. 105, 5, p. 947 1 p.

Erratum: A Neuroethics Framework for the Australian Brain Initiative (Neuron (2019) 101(3) (365–369), (S0896627319300054), (10.1016/j.neuron.2019.01.004))

Australian Brain Alliance, Jan 8 2020, In: Neuron. 105, 1, p. 201 1 p.

Functions of Gtf2i and Gtf2ird1 in the developing brain: Transcription, DNA binding and long-term behavioral consequences

Kopp, N. D., Nygaard, K. R., Liu, Y., McCullough, K. B., Maloney, S. E.Gabel, H. W. & Dougherty, J. D., Jun 3 2020, In: Human molecular genetics. 29, 9, p. 1498-1519 22 p.

Gating of human TRPV3 in a lipid bilayer

Deng, Z.Maksaev, G., Rau, M., Xie, Z., Hu, H.Fitzpatrick, J. A. J. & Yuan, P., Jul 1 2020, In: Nature Structural and Molecular Biology. 27, 7, p. 635-644 10 p.

How Outcome Uncertainty Mediates Attention, Learning, and Decision-Making

Monosov, I. E., Oct 2020, In: Trends in Neurosciences. 43, 10, p. 795-809 15 p.

How Support of Early Career Researchers Can Reset Science in the Post-COVID19 World

Gibson, E. M., Bennett, F. C., Gillespie, S. M., Güler, A. D., Gutmann, D. H., Halpern, C. H., Kucenas, S. C., Kushida, C. A., Lemieux, M., Liddelow, S., Macauley, S. L., Li, Q., Quinn, M. A., Roberts, L. W., Saligrama, N., Taylor, K. R., Venkatesh, H. S., Yalçın, B. & Zuchero, J. B., Jun 25 2020, In: Cell. 181, 7, p. 1445-1449 5 p.

International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts

International Brain Initiative, Jan 22 2020, In: Neuron. 105, 2, p. 212-216 5 p.

Local Perturbations of Cortical Excitability Propagate Differentially Through Large-Scale Functional Networks

Rosenthal, Z. P., Raut, R. V., Yan, P., Koko, D., Kraft, A. W., Czerniewski, L., Acland, B., Mitra, A., Snyder, L. H.Bauer, A. Q.Snyder, A. Z.Culver, J. P.Raichle, M. E. & Lee, J. M., May 14 2020, In: Cerebral Cortex. 30, 5, p. 3352-3369 18 p.

MeCP2 Represses Enhancers through Chromosome Topology-Associated DNA Methylation

Clemens, A. W., Wu, D. Y., Moore, J. R., Christian, D. L., Zhao, G. & Gabel, H. W., Jan 16 2020, In: Molecular cell. 77, 2, p. 279-293.e8

Metabolic changes in human brain evolution

Bauernfeind, A. L. & Babbitt, C. C., Jul 1 2020, In: Evolutionary Anthropology. 29, 4, p. 201-211 11 p.

Neural circuitry of information seeking

Bromberg-Martin, E. S. & Monosov, I. E., Oct 2020, In: Current Opinion in Behavioral Sciences. 35, p. 62-70 9 p.

Neural mechanisms of economic choices in mice

Kuwabara, M., Kang, N., Holy, T. E. & Padoa-Schioppa, C., Feb 2020, In: eLife. 9, e49669.

Neuronal activity in the primate amygdala during economic choice

Jezzini, A. & Padoa-Schioppa, C., Feb 5 2020, In: Journal of Neuroscience. 40, 6, p. 1286-1301 16 p.

Overseeing Memory Circuits by NFIA: New Face In Astrocytes

Li, Q., Jun 17 2020, In: Neuron. 106, 6, p. 878-880 3 p.

Plasmodium falciparum translational machinery condones polyadenosine repeats

Djuranovic, S. P., Erath, J., Andrews, R. J., Bayguinov, P. O., Chung, J. J., Chalker, D. L., Fitzpatrick, J. A. J., Moss, W. N., Szczesny, P. & Djuranovic, S., May 2020, In: eLife. 9, e57799.

Reinforcement biases subsequent perceptual decisions when confidence is low: A widespread behavioral phenomenon

Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T. H., Carandini, M., Tonegawa, S., Uchida, N. & Kepecs, A., Apr 2020, In: eLife. 9, e49834.

Robust principal component analysis for accurate outlier sample detection in RNA-Seq data

Chen, X., Zhang, B.Wang, T., Wang, T., Bonni, A. & Zhao, G., Jun 29 2020, In: BMC bioinformatics. 21, 1, 269.

Satellite glial cells promote regenerative growth in sensory neurons

Avraham, O., Deng, P. Y., Jones, S., Kuruvilla, R., Semenkovich, C. F.Klyachko, V. A. & Cavalli, V., Dec 1 2020, In: Nature communications. 11, 1, 4891.

Sleep restores place learning to the adenylyl cyclase mutant rutabaga

Dissel, S., Morgan, E., Duong, V., Chan, D., van Swinderen, B., Shaw, P. & Zars, T., Jan 2 2020, In: Journal of Neurogenetics. 34, 1, p. 83-91 9 p.

Structural mechanism for gating of a eukaryotic mechanosensitive channel of small conductance

Deng, Z.Maksaev, G., Schlegel, A. M., Zhang, J., Rau, M., Fitzpatrick, J. A. J., Haswell, E. S. & Yuan, P., Dec 1 2020, In: Nature communications. 11, 1, 3690.

Tempo and Pattern of Avian Brain Size Evolution

Ksepka, D. T., Balanoff, A. M., Smith, N. A., Bever, G. S., Bhullar, B. A. S., Bourdon, E., Braun, E. L., Burleigh, J. G., Clarke, J. A., Colbert, M. W., Corfield, J. R., Degrange, F. J., De Pietri, V. L., Early, C. M., Field, D. J., Gignac, P. M., Gold, M. E. L., Kimball, R. T., Kawabe, S., Lefebvre, L. & 17 others, , Jun 8 2020, In: Current Biology. 30, 11, p. 2026-2036.e3

The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain

Goodman, J. V., Yamada, T., Yang, Y., Kong, L., Wu, D. Y., Zhao, G.Gabel, H. W. & Bonni, A., Dec 1 2020, In: Nature communications. 11, 1, 3419.

The Mind of a Mouse

Abbott, L. F., Bock, D. D., Callaway, E. M., Denk, W., Dulac, C., Fairhall, A. L., Fiete, I., Harris, K. M., Helmstaedter, M., Jain, V., Kasthuri, N., LeCun, Y., Lichtman, J. W., Littlewood, P. B., Luo, L., Maunsell, J. H. R., Reid, R. C., Rosen, B. R., Rubin, G. M., Sejnowski, T. J., Seung, H.S., Svoboda, K., Tank, D.W., Tsao, D., Van Essen, D.C., Sep 17 2020, In: Cell. 182, 6, p. 1372-13T76 5 p.

The neurons that mistook a hat for a face

Arcaro, M. J., Ponce, C. & Livingstone, M., Jun 2020, In: eLife. 9, p. 1-19 19 p., e53798

The pheromone darcin drives a circuit for innate and reinforced behaviours

Demir, E., Li, K., Bobrowski-Khoury, N., Sanders, J. I., Beynon, R. J., Hurst, J. L., Kepecs, A. & Axel, R., Feb 6 2020, In: Nature. 578, 7793, p. 137-141 5 p.

The role of glia in protein aggregation

Li, Q. & Haney, M. S., Sep 2020, In: Neurobiology of Disease. 143, 105015.

The sleep nullifying apparatus: A highly efficient method of sleep depriving drosophila

Melnattur, K., Morgan, E., Duong, V., Kalra, A. & Shaw, P. J., Dec 2020, In: Journal of Visualized Experiments. 2020, 166, e62105.

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing

Autio, J. A., Glasser, M. F., Ose, T., Donahue, C. J., Bastiani, M., Ohno, M., Kawabata, Y., Urushibata, Y., Murata, K., Nishigori, K., Yamaguchi, M., Hori, Y., Yoshida, A., Go, Y., Coalson, T. S., Jbabdi, S., Sotiropoulos, S. N., Kennedy, H., Smith, S., Van Essen, D. C., Hayashi, T., Jul 15 2020, In: NeuroImage. 215, 116800.

Values encoded in orbitofrontal cortex are causally related to economic choices

Ballesta, S., Shi, W., Conen, K. E. & Padoa-Schioppa, C., Dec 17 2020, In: Nature. 588, 7838, p. 450-453 4 p.

Variation in the strength of allometry drives rates of evolution in primate brain shape

Sansalone, G., Allen, K., Ledogar, J. A., Ledogar, S., Mitchell, D. R., Profico, A., Castiglione, S., Melchionna, M., Serio, C., Mondanaro, A., Raia, P. & Wroe, S., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1930, 20200807.

Zika virus infection in the developing mouse produces dramatically different neuropathology dependent on viral strain

Noguchi, K. K., Swiney, B. S., Williams, S. L., Huffman, J. N., Lucas, K., Wang, S. H., Kapral, K. M., Li, A. & Dikranian, K. T., Jan 29 2020, In: Journal of Neuroscience. 40, 5, p. 1145-1161 17 p.

Realizing the Clinical Potential of Computational Psychiatry: Report From the Banbury Center Meeting, February 2019

Browning, M., Carter, C. S., Chatham, C., Den Ouden, H., Gillan, C. M., Baker, J. T., Chekroud, A. M., Cools, R., Dayan, P., Gold, J., Goldstein, R. Z., Hartley, C. A., Kepecs, A., Lawson, R. P., Mourao-Miranda, J., Phillips, M. L., Pizzagalli, D. A., Powers, A., Rindskopf, D., Roiser, J. P., Schmack, K., Schiller, D., Sebold, M., Stephan, K. E., Frank, M. J., Huys, Q. & Paulus, M., Jul 15 2020, In: Biological Psychiatry. 88, 2, p. e5-e10

Interneuron Types as Attractors and Controllers

Fishell, G. & Kepecs, A., Jul 8 2020, In: Annual Review of Neuroscience. 43, p. 1-30 30 p.

Robust principal component analysis for accurate outlier sample detection in RNA-Seq data

Chen, X., Zhang, B.Wang, T., Wang, T., Bonni, A. & Zhao, G., Jun 29 2020, In: BMC bioinformatics. 21, 1, 269.

Understanding the Uptake of Nanomedicines at Different Stages of Brain Cancer Using a Modular Nanocarrier Platform and Precision Bispecific Antibodies

Houston, Z. H., Bunt, J., Chen, K. S., Puttick, S., Howard, C. B., Fletcher, N. L., Fuchs, A. V., Cui, J., Ju, Y., Cowin, G., Song, X., Boyd, A. W., Mahler, S. M., Richards, L. J., Caruso, F. & Thurecht, K. J., May 27 2020, In: ACS Central Science. 6, 5, p. 727-738 12 p.

Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Feb 1 2020, In: Nature Biomedical Engineering. 4, 2, p. 223-231 9 p.

Is glass ceiling present? Towards the equal opportunity of women in child neurology

Mochida, G. H., Hagerman, R. J., Richards, L. & Chang, Y. C., 2020, In: No To Hattatsu. 52, 2, p. 97-108 12 p.

Transcription factors NFIA and NFIB induce cellular differentiation in high-grade astrocytoma

Chen, K. S., Bridges, C. R., Lynton, Z., Lim, J. W. C., Stringer, B. W., Rajagopal, R., Wong, K. T., Ganesan, D., Ariffin, H., Day, B. W., Richards, L. J. & Bunt, J., Jan 1 2020, In: Journal of Neuro-Oncology. 146, 1, p. 41-53 13 p.


A neural network for information seeking

White, J. K., Bromberg-Martin, E. S., Heilbronner, S. R., Zhang, K., Pai, J., Haber, S. N. & Monosov, I. E., Dec 1 2019, In: Nature communications. 10, 1, 5168.

Categorical encoding of decision variables in orbitofrontal cortex

Onken, A., Xie, J., Panzeri, S. & Padoa-Schioppa, C., 2019, In: PLoS computational biology. 15, 10, e1006667.

Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons

Lewis, E. M. A., Meganathan, K., Baldridge, D., Gontarz, P., Zhang, B., Bonni, A., Constantino, J. N. & Kroll, K. L., Dec 30 2019, In: Molecular Autism. 10, 1, 51.

Cerebral cortical folding, parcellation, and connectivity in humans, nonhuman primates, and mice

Van Essen, D. C., Donahue, C. J., Coalson, T. S., Kennedy, H., Hayashi, T. & Glasser, M. F., Dec 26 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 52, p. 26173-26180 8 p.

Characterization of the bone marrow adipocyte niche with three-dimensional electron microscopy

Robles, H., Park, S. J., Joens, M. S., Fitzpatrick, J. A. J., Craft, C. S. & Scheller, E. L., Jan 2019, In: Bone. 118, p. 89-98 10 p.

Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors

Majidi, S. P., Reddy, N. C., Moore, M. J., Chen, H., Yamada, T., Andzelm, M. M., Cherry, T. J., Hu, L. S., Greenberg, M. E. & Bonni, A., Nov 12 2019, In: Cell Reports. 29, 7, p. 2001-2015.e5

Ciftify: A framework for surface-based analysis of legacy MR acquisitions

Dickie, E. W., Anticevic, A., Smith, D. E., Coalson, T. S., Manogaran, M., Calarco, N., Viviano, J. D., Glasser, M. F., Van Essen, D. C. & Voineskos, A. N., Aug 15 2019, In: NeuroImage. 197, p. 818-826 9 p.

Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power

Glasser, M. F., Coalson, T. S., Bijsterbosch, J. D., Harrison, S. J., Harms, M. P., Anticevic, A., Van Essen, D. C. & Smith, S. M., Aug 15 2019, In: NeuroImage. 197, p. 435-438 4 p.

Conditional knockout of UBC13 produces disturbances in gait and spontaneous locomotion and exploration in mice

Wozniak, D. F., Valnegri, P., Dearborn, J. T., Fowler, S. C. & Bonni, A., Dec 1 2019, In: Scientific reports. 9, 1, 4379.

Diffusion Tensor Model links to Neurite Orientation Dispersion and Density Imaging at high b-value in Cerebral Cortical Gray Matter

Fukutomi, H., Glasser, M. F., Murata, K., Akasaka, T., Fujimoto, K., Yamamoto, T., Autio, J. A., Okada, T., Togashi, K., Zhang, H., Van Essen, D. C. & Hayashi, T., Dec 1 2019, In: Scientific reports. 9, 1, 12246.

Economic Decisions through Circuit Inhibition

Ballesta, S. & Padoa-Schioppa, C., Nov 18 2019, In: Current Biology. 29, 22, p. 3814-3824.e5

Evolving Images for Visual Neurons Using a Deep Generative Network Reveals Coding Principles and Neuronal Preferences

Ponce, C. R., Xiao, W., Schade, P. F., Hartmann, T. S., Kreiman, G. & Livingstone, M. S., May 2 2019, In: Cell. 177, 4, p. 999-1009.e10

Exercise-induced loading increases ilium cortical area in a selectively bred mouse model

Lewton, K. L., Ritzman, T., Copes, L. E., Garland, T. & Capellini, T. D., Mar 2019, In: American Journal of Physical Anthropology. 168, 3, p. 543-551 9 p.

Eye-hand re-coordination: A pilot investigation of gaze and reach biofeedback in chronic stroke

Rizzo, J. R., Beheshti, M., Shafieesabet, A., Fung, J., Hosseini, M., Rucker, J. C., Snyder, L. H. & Hudson, T. E., 2019, Progress in Brain Research. Ramat, S. & Shaikh, A. G. (eds.). Elsevier B.V., p. 361-374 14 p. (Progress in Brain Research; vol. 249).

Fast objective coupled planar illumination microscopy

Greer, C. J. & Holy, T. E., Dec 1 2019, In: Nature communications. 10, 1, 4483.

Genetic diversity underlying behavioral plasticity in human adaptation

Bauernfeind, A. L. & Babbitt, C. C., 2019, Progress in Brain Research. Hofman, M. A. (ed.). Elsevier B.V., p. 41-58 18 p. (Progress in Brain Research; vol. 250).

Genomic kinship construction to enhance genetic analyses in the human connectome project data

Kochunov, P., Donohue, B., Mitchell, B. D., Ganjgahi, H., Adhikari, B., Ryan, M., Medland, S. E., Jahanshad, N., Thompson, P. M., Blangero, J., Fieremans, E., Novikov, D. S., Marcus, D.Van Essen, D. C., Glahn, D. C., Elliot Hong, L. & Nichols, T. E., Apr 1 2019, In: Human Brain Mapping. 40, 5, p. 1677-1688 12 p.

HDAC5 promotes optic nerve regeneration by activating the mTOR pathway

Pita-Thomas, W., Mahar, M., Joshi, A., Gan, D. & Cavalli, V., Jul 2019, In: Experimental Neurology. 317, p. 271-283 13 p.

Hierarchical Heterogeneity across Human Cortex Shapes Large-Scale Neural Dynamics

Demirtaş, M., Burt, J. B., Helmer, M., Ji, J. L., Adkinson, B. D., Glasser, M. F., Van Essen, D. C., Sotiropoulos, S. N., Anticevic, A. & Murray, J. D., Mar 20 2019, In: Neuron. 101, 6, p. 1181-1194.e13

Hybridization in human evolution: Insights from other organisms

Ackermann, R. R., Arnold, M. L., Baiz, M. D., Cahill, J. A., Cortés-Ortiz, L., Evans, B. J., Grant, B. R., Grant, P. R., Hallgrimsson, B., Humphreys, R. A., Jolly, C. J., Malukiewicz, J., Percival, C. J., Ritzman, T. B., Roos, C., Roseman, C. C., Schroeder, L., Smith, F. H., Warren, K. A., Wayne, R. K., Zinner, D., Jul 2019, In: Evolutionary Anthropology. 28, 4, p. 189-209 21 p.

Location and Cell-Type-Specific Bias of Metabotropic Glutamate Receptor, mGlu5, Negative Allosteric Modulators

Jong, Y. J. I., Harmon, S. K. & O’Malley, K. L., Nov 20 2019, In: ACS Chemical Neuroscience. 10, 11, p. 4558-4570 13 p.

Mechanism of microtubule plus-end tracking by the plant-specific SPR1 protein and its development as a versatile plus-end marker

Balkunde, R., Foroughi, L., Ewan, E., Emenecker, R., Cavalli, V. & Dixit, R., Nov 1 2019, In: Journal of Biological Chemistry. 294, 44, p. 16374-16384 11 p.

ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine

Schlosberg, C. E., Wu, D. Y., Gabel, H. W. & Edwards, J. R., Mar 18 2019, In: Nucleic acids research. 47, 5, e28.

Monitoring behaviorally induced biochemical changes using fluorescence lifetime photometry

Lee, S. J., Chen, Y., Lodder, B. & Sabatini, B. L., 2019, In: Frontiers in Genetics. 10, JUL, 766.

Morning and Evening Circadian Pacemakers Independently Drive Premotor Centers via a Specific Dopamine Relay

Liang, X., Ho, M. C. W., Zhang, Y., Li, Y., Wu, M. N., Holy, T. E. & Taghert, P. H., May 22 2019, In: Neuron. 102, 4, p. 843-857.e4

Neuronal evidence for good-based economic decisions under variable action costs

Cai, X. & Padoa-Schioppa, C., Dec 1 2019, In: Nature communications. 10, 1, 393

Nociceptor Deletion of Tsc2 Enhances Axon Regeneration by Inducing a Conditioning Injury Response in Dorsal Root Ganglia

Carlin, D., Halevi, A. E., Ewan, E. E., Moore, A. M. & Cavalli, V., May 1 2019, In: eNeuro. 6, 3

Partial adaptation to the value range in the macaque orbitofrontal cortex

Conen, K. E. & Padoa-Schioppa, C., May 1 2019, In: Journal of Neuroscience. 39, 18, p. 3498-3513 16 p.

Publisher Correction: Sensory experience remodels genome architecture in neural circuit to drive motor learning (Nature, (2019), 569, 7758, (708-713), 10.1038/s41586-019-1190-7)

Yamada, T., Yang, Y., Valnegri, P., Juric, I., Abnousi, A., Markwalter, K. H., Guthrie, A. N., Godec, A., Oldenborg, A., Hu, M., Holy, T. E. & Bonni, A., Jun 13 2019, In: Nature. 570, 7760, p. E33

Regulation of neuronal connectivity in the mammalian brain by chromatin remodeling

Goodman, J. V. & Bonni, A., Dec 2019, In: Current Opinion in Neurobiology. 59, p. 59-68 10 p.

Sensorimotor Coding of Vermal Granule Neurons in the Developing Mammalian Cerebellum

Markwalter, K. H., Yang, Y., Holy, T. E. & Bonni, A., Aug 21 2019, In: The Journal of neuroscience : the official journal of the Society for Neuroscience. 39, 34, p. 6626-6643 18 p.

Sensory coding mechanisms revealed by optical tagging of physiologically defined neuronal types

Lee, D., Kume, M. & Holy, T. E., Dec 13 2019, In: Science. 366, 6471, p. 1384-1389 6 p.

Sensory experience remodels genome architecture in neural circuit to drive motor learning

Yamada, T., Yang, Y., Valnegri, P., Juric, I., Abnousi, A., Markwalter, K. H., Guthrie, A. N., Godec, A., Oldenborg, A., Hu, M., Holy, T. E. & Bonni, A., May 30 2019, In: Nature. 569, 7758, p. 708-713 6 p.

Sodium-activated potassium channels moderate excitability in vascular smooth muscle

Li, P., Halabi, C. M., Stewart, R., Butler, A., Brown, B., Xia, X.Santi, C.England, S., Ferreira, J., Mecham, R. P. & Salkoff, L., Oct 1 2019, In: Journal of Physiology. 597, 20, p. 5093-5108 16 p.

Spatial Clustering of Inhibition in Mouse Primary Visual Cortex

D’Souza, R. D., Bista, P., Meier, A. M., Ji, W. & Burkhalter, A., Nov 6 2019, In: Neuron. 104, 3, p. 588-600.e5

Spinal V2b neurons reveal a role for ipsilateral inhibition in speed control

Callahan, R. A., Roberts, R., Sengupta, M., Kimura, Y., Higashijima, S. I. & Bagnall, M. W., Jul 2019, In: eLife. 8, e47837.

Staphylococcus aureus infects osteoclasts and replicates intracellularly

Krauss, J. L., Roper, P. M., Ballard, A., Shih, C. C., Fitzpatrick, J. A. J., Cassat, J. E., Pei Ying, N., Pavlos, N. J. & Veisa, D. J., 2019, In: mBio. 10, 5, e02447-19.

Staying awake to stay alive: A circuit controlling starvation-induced waking

Melnattur, K. & Shaw, P., Mar 2019, In: PLoS biology. 17, 3, e3000199.

Structured inhibitory activity dynamics in new virtual environments

Arriaga, M. & Han, E. B., Oct 2019, In: eLife. 8

Therapeutic efficacy of favipiravir against bourbon virus in mice

Bricker, T. L., Shafiuddin, M., Gounder, A. P., Janowski, A. B.Zhao, G., Williams, G. D., Jagger, B. W., Diamondid, M. S., Bailey, T.Kwon, J. H.Wangid, D. & Boon, A. C. M., Jun 2019, In: PLoS pathogens. 15, 6, e1007790.

Tmem178 negatively regulates store-operated calcium entry in myeloid cells via association with STIM1

Yang, Z., Yan, H., Dai, W., Jing, J., Yang, Y., Mahajan, S., Zhou, Y., Li, W., Macaubas, C., Mellins, E. D., Shih, C. C., Fitzpatrick, J. A. J. & Faccio, R., Jul 2019, In: Journal of Autoimmunity. 101, p. 94-108 15 p.

U–Pb-dated flowstones restrict South African early hominin record to dry climate phases

Pickering, R., Herries, A. I. R., Woodhead, J. D., Hellstrom, J. C., Green, H. E., Paul, B., Ritzman, T., Strait, D. S., Schoville, B. J. & Hancox, P. J., Jan 10 2019, In: Nature. 565, 7738, p. 226-229 4 p.

Using animal models to evaluate the functional consequences of anesthesia during early neurodevelopment

Maloney, S. E., Creeley, C. E., Hartman, R. E., Yuede, C. M.Zorumski, C. F., Jevtovic-Todorovic, V., Dikranian, K.Noguchi, K. K.Farber, N. B. & Wozniak, D. F., Nov 2019, In: Neurobiology of Learning and Memory. 165, 106834.

Vertical transmission in Caenorhabditis nematodes of RNA molecules encoding a viral RNA-dependent RNA polymerase

Richaud, A., Frézal, L., Tahan, S., Jiang, H., Blatter, J. A.Zhao, G., Kaur, T., Wang, D. & Félix, M. A., Dec 3 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 49, p. 24738-24747 10 p.

Vesicular glutamatergic transmission in noise-induced loss and repair of cochlear ribbon synapses

Kim, K. X., Payne, S., Yang-Hood, A., Li, S. Z., Davis, B., Carlquist, J., Ghaffari, B. V., Gantz, J. A., Kallogjeri, D.Fitzpatrick, J. A. J.Ohlemiller, K. K.Hirose, K. & Rutherford, M. A., Jun 5 2019, In: Journal of Neuroscience. 39, 23, p. 4434-4447 14 p.

Viral complementation of immunodeficiency confers protection against enteric pathogens via interferon-λ

Ingle, H., Lee, S., Ai, T., Orvedahl, A., Rodgers, R., Zhao, G., Sullender, M., Peterson, S. T., Locke, M., Liu, T. C., Yokoyama, C. C., Sharp, B., Schultz-Cherry, S., Miner, J. J. & Baldridge, M. T., Jul 1 2019, In: Nature microbiology. 4, 7, p. 1120-1128 9 p.

Isolation of region-specific microglia from one adult mouse brain hemisphere for deep single-cell rna sequencing

Zhou, L. & Li, Q., Dec 2019, In: Journal of Visualized Experiments. 2019, 154, e60347.

Variants in nuclear factor I genes influence growth and development

Zenker, M., Bunt, J., Schanze, I., Schanze, D., Piper, M., Priolo, M., Gerkes, E.H., Gronostajski, R.M., Richards, L.J., Vogt, J., Wessels, M.W., Hennekam, R.C., Dec 1 2019, In: American Journal of Medical Genetics, Part C: Seminars in Medical Genetics, 181 (4), pp. 611-626.

Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea

Zhao, G., Droit, L., Gilbert, M. H., Schiro, F. R., Didier, P. J., Si, X., Paredes, A., Handley, S. A., Virgin, H. W., Bohm, R. P. & Wang, D., Jan 15 2019, In: Virology. 527, p. 77-88 12 p.

Increased cognitive complexity reveals abnormal brain network activity in individuals with corpus callosum dysgenesis

Hearne, L. J., Dean, R. J., Robinson, G. A., Richards, L. J., Mattingley, J. B. & Cocchi, L., 2019, In: NeuroImage: Clinical. 21, 101595.


Development and evolution of cerebral and cerebellar cortex

Van Essen, D. C., Donahue, C. J. & Glasser, M. F., Aug 1 2018, In: Brain, Behavior and Evolution. 91, 3, p. 158-169 12 p.

Development of vestibular behaviors in zebrafish

Bagnall, M. W. & Schoppik, D., Dec 2018, In: Current Opinion in Neurobiology. 53, p. 83-89 7 p.

Acute control of the sleep switch in drosophila reveals a role for gap junctions in regulating behavioral responsiveness

Troup, M., Yap, M. H. W., Rohrscheib, C., Grabowska, M. J., Ertekin, D., Randeniya, R., Kottler, B., Larkin, O., Munro, K., Shaw, P. J. & van Swinderen, B., Aug 15 2018, In: eLife. 7, e37105.

A gyral coordinate system predictive of fibre orientations

Cottaar, M., Bastiani, M., Chen, C., Dikranian, K.Van Essen, D., Behrens, T. E., Sotiropoulos, S. N. & Jbabdi, S., Aug 1 2018, In: NeuroImage. 176, p. 417-430 14 p.

Cargo crowding at actin-rich regions along axons causes local traffic jams

Sood, P., Murthy, K., Kumar, V., Nonet, M. L., Menon, G. I. & Koushika, S. P., Mar 2018, In: Traffic. 19, 3, p. 166-181 16 p.

Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome

Cheng, C., Deng, P. Y., Ikeuchi, Y., Yuede, C., Li, D., Rensing, N., Huang, J., Baldridge, D.Maloney, S. E.Dougherty, J. D.Constantino, J., Jahani-Asl, A., Wong, M.Wozniak, D. F.Wang, T.Klyachko, V. A. & Bonni, A., Nov 6 2018, In: Cell Reports. 25, 6, p. 1404-1414.e6

Compound C inhibits nonsense-mediated RNA decay independently of AMPK

Cheruiyot, A., Li, S., Nickless, A., Roth, R., Fitzpatrick, J. A. J. & You, Z., Oct 2018, In: PloS one. 13, 10, e0204978.

Craniomandibular form and body size variation of first generation mouse hybrids: A model for hominin hybridization

Warren, K. A., Ritzman, T. B., Humphreys, R. A., Percival, C. J., Hallgrímsson, B. & Ackermann, R. R., Mar 2018, In: Journal of Human Evolution. 116, p. 57-74 18 p.

Deletion of tsc2 in nociceptors reduces target innervation, ion channel expression, and sensitivity to heat

Carlin, D., Golden, J. P., Mogha, A., Samineni, V. K., Monk, K. R., Gereau, R. W. & Cavalli, V., Mar 1 2018, In: eNeuro. 5, 2, e0436-17.2018.

Dissociation of LFP power and tuning in the frontal cortex during memory

Holmes, C. D., Papadimitriou, C. & Snyder, L. H., Sep 19 2018, In: Journal of Neuroscience. 38, 38, p. 8177-8186 10 p.

Dynamic patterns of cortical expansion during folding of the preterm human brain

Garcia, K. E., Robinson, E. C., Alexopoulos, D., Dierker, D. L., Glasser, M. F., Coalson, T. S., Ortinau, C. M., Rueckert, D., Taber, L. A., Van Essen, D. C.Rogers, C. E.Smysere, C. D. & Bayly, P. V., Mar 20 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 12, p. 3156-3161 6 p.

Epigenetic regulator UHRF1 inactivates REST and growth suppressor gene expression via DNA methylation to promote axon regeneration

Oh, Y. M., Mahar, M., Ewan, E. E., Leahy, K. M., Zhao, G. & Cavalli, V., Dec 26 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 52, p. E12417-E12426

Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects

Harms, M. P., Somerville, L. H., Ances, B. M., Andersson, J., Barch, D. M., Bastiani, M., Bookheimer, S. Y., Brown, T. B., Buckner, R. L., Burgess, G. C., Coalson, T. S., Chappell, M. A., Dapretto, M., Douaud, G., Fischl, B., Glasser, M. F., Greve, D. N., Hodge, C., Jamison, K. W., Jbabdi, S. & 21 others, , Dec 2018, In: NeuroImage. 183, p. 972-984 13 p.

From fossils to function: Integrative and taxonomically inclusive approaches to vertebrate evolutionary neuroscience

Morhardt, A. C., Aug 1 2018, In: Brain, Behavior and Evolution. 91, 3, p. 123-124 2 p.

GPCR signalling from within the cell

Jong, Y. J. I., Harmon, S. K. & O’Malley, K. L., Nov 2018, In: British Journal of Pharmacology. 175, 21, p. 4026-4035 10 p.

Intracellular GPCRs Play Key Roles in Synaptic Plasticity

Jong, Y. J. I., Harmon, S. K. & O’Malley, K. L., Sep 19 2018, In: ACS Chemical Neuroscience. 9, 9, p. 2162-2172 11 p.

Intrinsic mechanisms of neuronal axon regeneration

Mahar, M. & Cavalli, V., Jun 1 2018, In: Nature Reviews Neuroscience. 19, 6, p. 323-337 15 p.

LONGO: An R package for interactive gene length dependent analysis for neuronal identity

McCoy, M. J., Paul, A. J., Victor, M. B., Richner, M., Gabel, H. W., Gong, H., Yoo, A. S. & Ahn, T. H., Jul 1 2018, In: Bioinformatics. 34, 13, p. i422-i428

LysMD3 is a type II membrane protein without an in vivo role in the response to a range of pathogens

Yokoyama, C. C., Baldridge, M.Leung, D.Zhao, G., Desai, C., Liu, T-C., Diaz-Ochoa, V. E., Huynh, J. P., Kimmey, J. M., Sennott, E. L., Hole, C. R., Idol, R. A., Park, S., Storek, K. M., Wang, C., Hwang, S., Milam, A. V., Chen, E., Kerrinnes, T., Starnbach, M. N. & 12 others, , Apr 20 2018, In: Journal of Biological Chemistry. 293, 16, p. 6022-6038 17 p.

Mandibular ramus shape variation and ontogeny in Homo sapiens and Homo neanderthalensis

Terhune, C. E., Ritzman, T. B. & Robinson, C. A., Aug 2018, In: Journal of Human Evolution. 121, p. 55-71 17 p.

Mining the Virome for Insights into Type 1 Diabetes

Park, A. & Zhao, G., May 1 2018, In: DNA and cell biology. 37, 5, p. 422-425 4 p.

Modern Laser Scanning Confocal Microscopy

Bayguinov, P. O., Oakley, D. M., Shih, C. C., Geanon, D. J., Joens, M. S. & Fitzpatrick, J. A. J., Jul 2018, In: Current Protocols in Cytometry. 85, 1, e39.

Multimodal surface matching with higher-order smoothness constraints

Robinson, E. C., Garcia, K., Glasser, M. F., Chen, Z., Coalson, T. S., Makropoulos, A., Bozek, J., Wright, R., Schuh, A., Webster, M., Hutter, J., Price, A., Cordero Grande, L., Hughes, E., Tusor, N., Bayly, P. V., Van Essen, D. C., Smith, S. M., Edwards, A. D., Hajnal, J., Jenkinson, M., Glocker, B., Rueckert, D., Feb 15 2018, In: NeuroImage. 167, p. 453-465 13 p.

Neurite imaging reveals microstructural variations in human cerebral cortical gray matter

Fukutomi, H., Glasser, M. F., Zhang, H., Autio, J. A., Coalson, T. S., Okada, T., Togashi, K., Van Essen, D. C. & Hayashi, T., Nov 15 2018, In: NeuroImage. 182, p. 488-499 12 p.

Non-cell Autonomous Degeneration: Role of Astrocytes in Neurodegenerative Diseases. Role of Astrocytes in Neurodegenerative Diseases.

Smith, S. E. & Bonni, A., Apr 4 2018, The Molecular and Cellular Basis of Neurodegenerative Diseases: Underlying Mechanisms.Elsevier Inc., p. 415-440 26 p.

Nonlinear optical imaging of extracellular matrix proteins

Shih, C. C., Oakley, D. M., Joens, M. S., Roth, R. A. & Fitzpatrick, J. A. J., 2018, Methods in Cell Biology.Academic Press Inc., p. 57-78 22 p. (Methods in Cell Biology; vol. 143).

Palladin is a neuron-specific translational target of mtor signaling that regulates axon morphogenesis

Umegaki, Y., Brotons, A. M., Nakanishi, Y., Luo, Z., Zhang, H., Bonni, A. & Ikeuchi, Y., May 23 2018, In: Journal of Neuroscience. 38, 21, p. 4985-4995 11 p.

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans

Van Essen, D. C. & Glasser, M. F., Aug 22 2018, In: Neuron. 99, 4, p. 640-663 24 p.

Place learning overrides innate behaviors in Drosophila

Baggett, V., Mishra, A., Kehrer, A. L., Robinson, A. O., Shaw, P. & Zars, T., Mar 2018, In: Learning and Memory. 25, 3, p. 122-128 7 p.

Quantitative assessment of prefrontal cortex in humans relative to nonhuman primates

Donahue, C. J., Glasser, M. F., Preuss, T. M., Rilling, J. K. & Van Essen, D. C., May 29 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 22, p. E5183-E5192

Rapid cloning of novel rhesus adenoviral vaccine vectors

Abbink, P., Kirilova, M., Boyd, M., Mercado, N., Li, Z., Nityanandam, R., Nanayakkara, O., Peterson, R., Larocca, R. A., Aid, M., Tartaglia, L., Mutetwa, T., Blass, E., Jetton, D., Maxfield, L. F., Borducchi, E. N., Badamchi-Zadeh, A., Handley, S.Zhao, G., Virgin, H. W., Havenga, M. J., Barouch, D.H., Mar 1 2018, In: Journal of virology. 92, 6, e01924-17.

Reciprocal spatiotemporally controlled apoptosis regulates Wolffian duct cloaca fusion

Hoshi, M., Reginensi, A., Joens, M. S., Fitzpatrick, J. A. J.McNeill, H. & Jain, S., Mar 2018, In: Journal of the American Society of Nephrology. 29, 3, p. 775-783 9 p.

Red blood cell phenotype fidelity following glycerol cryopreservation optimized for research purposes

Rogers, S. C., Dosier, L. B., McMahon, T. J., Zhu, H., Timm, D., Zhang, H., Herbert, J., Atallah, J., Palmer, G. M., Cook, A., Ernst, M., Prakash, J., Terng, M., Towfighi, P., Doctor, R., Said, A., Joens, M. S., Fitzpatrick, J. A. J., Hanna, G., Lin, X., Reisz, J. A., Nemkov, T., D’Alessandro, A., Doctor, A., Dec 2018, In: PloS one. 13, 12, e0209201.

Scaling of human brain size

Van Essen, D. C., Jun 15 2018, In: Science. 360, 6394, p. 1184-1185 2 p.

Scaling of Primate Forearm Muscle Architecture as It Relates to Locomotion and Posture

Leischner, C. L., Crouch, M., Allen, K. L., Marchi, D., Pastor, F. & Hartstone-Rose, A., Mar 2018, In: Anatomical Record. 301, 3, p. 484-495 12 p.

Single Units in the Posterior Parietal Cortex Encode Patterns of Bimanual Coordination

Mooshagian, E., Wang, C., Holmes, C. D. & Snyder, L. H., May 1 2018, In: Cerebral Cortex. 28, 5, p. 1549-1567 19 p.

Sleep regulates visual selective attention in Drosophila

Kirszenblat, L., Ertekin, D., Goodsell, J., Zhou, Y., Shaw, P. J. & van Swinderen, B., Dec 2018, In: Journal of Experimental Biology. 221, 24, jeb191429.

Spatial eye–hand coordination during bimanual reaching is not systematically coded in either LIP or PRR

Mooshagian, E. & Snyder, L. H., Apr 17 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 16, p. E3817-E3826

Spontaneous Infra-slow Brain Activity Has Unique Spatiotemporal Dynamics and Laminar Structure

Mitra, A., Kraft, A., Wright, P., Acland, B., Snyder, A. Z., Rosenthal, Z., Czerniewski, L., Bauer, A.Snyder, L.Culver, J.Lee, J. M. & Raichle, M. E., Apr 18 2018, In: Neuron. 98, 2, p. 297-305.e6

The accessory olfactory system: Innately specialized or microcosm of mammalian circuitry?

Holy, T. E., Jul 8 2018, In: Annual Review of Neuroscience. 41, p. 501-525 25 p.

The Basal Forebrain Regulates Global Resting-State fMRI Fluctuations

Turchi, J., Chang, C., Ye, F. Q., Russ, B. E., Yu, D. K., Cortes, C. R., Monosov, I. E., Duyn, J. H. & Leopold, D. A., Feb 21 2018, In: Neuron. 97, 4, p. 940-952.e4

The Human Connectome Project 7 Tesla retinotopy dataset: Description and population receptive field analysis

Benson, N. C., Jamison, K. W., Arcaro, M. J., Vu, A. T., Glasser, M. F., Coalson, T. S., Van Essen, D. C., Yacoub, E., Ugurbil, K., Winawer, J. & Kay, K., 2018, In: Journal of Vision. 18, 13, p. 1-22 22 p.

The impact of traditional neuroimaging methods on the spatial localization of cortical areas

Coalson, T. S., Van Essen, D. C. & Glasser, M. F., Jul 3 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 27, p. E6356-E6365

The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5–21 year olds

Somerville, L. H., Bookheimer, S. Y., Buckner, R. L., Burgess, G. C., Curtiss, S. W., Dapretto, M., Elam, J. S., Gaffrey, M. S., Harms, M. P., Hodge, C., Kandala, S., Kastman, E. K., Nichols, T. E., Schlaggar, B. L., Smith, S. M., Thomas, K. M., Yacoub, E., Van Essen, D. C. & Barch, D. M., Dec 2018, In: NeuroImage. 183, p. 456-468 13 p.

The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles

Gămănuţ, R., Kennedy, H., Toroczkai, Z., Ercsey-Ravasz, M., Van Essen, D. C., Knoblauch, K. & Burkhalter, A., Feb 7 2018, In: Neuron. 97, 3, p. 698-715.e10

The relationship between spatial configuration and functional connectivity of brain regions

Bijsterbosch, J. D., Woolrich, M. W., Glasser, M. F., Robinson, E. C., Beckmann, C. F., Van Essen, D. C., Harrison, S. J. & Smith, S. M., Feb 16 2018, In: eLife. 7, e32992.

The Zinc Finger Transcription Factor PLAGL2 Enhances Stem Cell Fate and Activates Expression of ASCL2 in Intestinal Epithelial Cells

Strubberg, A. M., Veronese Paniagua, D. A., Zhao, T., Dublin, L., Pritchard, T., Bayguinov, P. O., Fitzpatrick, J. A. J. & Madison, B. B., Aug 14 2018, In: Stem Cell Reports. 11, 2, p. 410-424 15 p.

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data

Glasser, M. F., Coalson, T. S., Bijsterbosch, J. D., Harrison, S. J., Harms, M. P., Anticevic, A., Van Essen, D. C. & Smith, S. M., Nov 1 2018, In: NeuroImage. 181, p. 692-717 26 p.

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

Schaum, N., Karkanias, J., Neff, N.F., May, A.P., Quake, S.R., Wyss-Coray, T., Darmanis, S., Batson, J., Botvinnik, O., Chen, M.B., Chen, S., Green, F., Jones, R.C., Maynard, A., Penland, L., Pisco, A.O., Sit, R.V., Stanley, G.M., Webber, J.T., Zanini, F., Baghel, A.S., Bakerman, I., Bansal, I., Berdnik, D., Bilen, B., Brownfield, D., Cain, C., Cho, M., Cirolia, G., Conley, S.D., Demers, A., Demir, K., de Morree, A., Divita, T., du Bois, H., Dulgeroff, L.B.T., Ebadi, H., Espinoza, F.H., Fish, M., Gan, Q., George, B.M., Gillich, A., Genetiano, G., Gu, X., Gulati, G.S., Hang, Y., Hosseinzadeh, S., Huang, A., Iram, T., Isobe, T., Ives, F., Kao, K.S., Karnam, G., Kershner, A.M., Kiss, B.M., Kong, W., Kumar, M.E., Lam, J.Y., Lee, D.P., Lee, S.E., Li, G., Li, Q., Liu, L., Lo, A., Lu, W., Manjunath, A., May, K.L., May, O.L., McKay, M., Metzger, R.J., Mignardi, M., Min, D., Nabhan, A.N., Ng, K.M., Noh, J., Patkar, R., Peng, W.C., Puccinelli, R., Rulifson, E.J., Sikandar, S.S., Sinha, R., Szade, K., Tan, W., Tato, C., Tellez, K., Travaglini, K.J., Tropini, C., Waldburger, L., van Weele, L.J., Wosczyna, M.N., Xiang, J., Xue, S., Youngyunpipatkul, J., Zardeneta, M.E., Zhang, F., Zhou, L., Castro, P., Croote, D., DeRisi, J.L., Kuo, C.S., Lehallier, B., Nguyen, P.K., Tan, S.Y., Wang, B.M., Yousef, H., Beachy, P.A., Chan, C.K.F., Huang, K.C., Weinberg, K., Wu, S.M., Barres, B.A., Clarke, M.F., Kim, S.K., Krasnow, M.A., Nusse, R., Rando, T.A., Sonnenburg, J., Weissman, I.L., Oct 18 2018, In: Nature. 562, 7727, p. 367-372 6 p.

An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings.Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings).

Erratum: Correction: A Mixture of Delta-Rules Approximation to Bayesian Inference in Change-Point Problems (PLoS computational biology (2013) 9 7 (e1003150))

Wilson, R. C., Nassar, M. R., Tavoni, G. & Gold, J. I., Jun 1 2018, In: PLoS computational biology. 14, 6, p. e1006210

DCC Is Required for the Development of Nociceptive Topognosis in Mice and Humans

da Silva, R. V., Johannssen, H. C., Wyss, M. T., Roome, R. B., Bourojeni, F. B., Stifani, N., Marsh, A. P. L., Ryan, M. M., Lockhart, P. J., Leventer, R. J., Richards, L. J., Rosenblatt, B., Srour, M., Weber, B., Zeilhofer, H. U. & Kania, A., Jan 30 2018, In: Cell Reports. 22, 5, p. 1105-1114 10 p.

Summary: Order and disorder in brains and behavior

Kepecs, A., 2018, In: Cold Spring Harbor symposia on quantitative biology. 83, p. 219-225 7 p.

An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings.Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings).

DCC mutation update: Congenital mirror movements, isolated agenesis of the corpus callosum, and developmental split brain syndrome

Marsh, A.P.L., Edwards, T.J., Galea, C., Cooper, H.M., Engle, E.C., Jamuar, S.S., Méneret, A., Moutard, M., Nava, C., Rastetter, A., Robinson, G., Rouleau, G., Roze, E., Spencer-Smith, M., Trouillard, O., Billette de Villemeur, T., Walsh, C.A., Yu, T.W., Heron, D., Sherr, E.H., Richards, L.J., Depienne, C., Leventer, R.J., Lockhart, P.J., Jan 2018, In: Human mutation. 39, 1, p. 23-39 17 p.


A genetic variant of the sperm-specific SLO3 K+ channel has altered pH and Ca2+ sensitivities

Geng, Y., Ferreira, J. J., Dzikunu, V., Butler, A., Lybaert, P., Yuan, P., Magleby, K. L., Salkoff, L. & Santi, C. M., May 26 2017, In: Journal of Biological Chemistry. 292, 21, p. 8978-8987 10 p.

A laminar organization for selective cortico-cortical communication

D’Souza, R. D. & Burkhalter, A., Aug 22 2017, In: Frontiers in Neuroanatomy. 11, 71.

A murine herpesvirus closely related to ubiquitous human herpesviruses causes T-cell depletion

Patel, S. J., Zhao, G., Penna, V. R., Park, E., Lauron, E. J., Harvey, I. B., Beatty, W. L.Plougastel-Douglas, B., Poursine-Laurent, J., Fremont, D. H.Wang, D. & Yokoyama, W. M., May 1 2017, In: Journal of virology. 91, 9, e02463-16.

Anterior cingulate is a source of valence-specific information about value and uncertainty

Monosov, I. E., Dec 1 2017, In: Nature communications. 8, 1, 134.

A Series of Suppressive Signals within the Drosophila Circadian Neural Circuit Generates Sequential Daily Outputs

Liang, X., Holy, T. E. & Taghert, P. H., Jun 21 2017, In: Neuron. 94, 6, p. 1173-1189.e4

A single transcription factor is sufficient to induce and maintain secretory cell architecture

Lo, H. Y. G., Jin, R. U., Sibbel, G., Liu, D., Karki, A., Joens, M. S., Madison, B. B., Zhang, B.Blanc, V.Fitzpatrick, J. A. J.Davidson, N. O., Konieczn, S. F. & Mills, J. C., Jan 15 2017, In: Genes and Development. 31, 2, p. 154-171 18 p.

Best practices in data analysis and sharing in neuroimaging using MRI

Nichols, T. E., Das, S., Eickhoff, S. B., Evans, A. C., Glatard, T., Hanke, M., Kriegeskorte, N., Milham, M. P., Poldrack, R. A., Poline, J. B., Proal, E., Thirion, B., Van Essen, D. C., White, T. & Yeo, B. T. T., Feb 23 2017, In: Nature neuroscience. 20, 3, p. 299-303 5 p.

Bone-induced expression of integrin b3 enables targeted nanotherapy of breast cancer metastases

Ross, M. H., Esser, A. K., Fox, G. C., Schmieder, A. H., Yang, X., Hu, G., Pan, D., Su, X., Xu, Y., Novack, D. V., Walsh, T., Colditz, G. A., Lukaszewicz, G. H., Cordell, E., Novack, J., Fitzpatrick, J. A. J., Waning, D. L., Mohammad, K. S., Guise, T. A., Lanza, G. M. Weilbaecher, K. N., In: Cancer research. 77, 22, p. 6299-6312 14 p.

Catheterization alters bladder ecology to potentiate Staphylococcus aureus infection of the urinary tract

Walker, J. N., Flores-Mireles, A. L., Pinkner, C. L., Schreiber, H. L., Joens, M. S., Park, A. M., Potretzke, A. M., Bauman, T. M., Pinkner, J. S., Fitzpatrick, J. A. J.Desai, A.Caparon, M. G. & Hultgren, S. J., Oct 10 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 41, p. E8721-E8730

Dedicated hippocampal inhibitory networks for locomotion and immobility

Arriaga, M. & Han, E. B., Sep 20 2017, In: Journal of Neuroscience. 37, 38, p. 9222-9238 17 p.

Delayed Otolith Development Does Not Impair Vestibular Circuit Formation in Zebrafish

Roberts, R., Elsner, J. & Bagnall, M. W., Jun 1 2017, In: JARO – Journal of the Association for Research in Otolaryngology. 18, 3, p. 415-425 11 p.

Deletion of cytosolic gating ring decreases gate and voltage sensor coupling in BK channels

Zhang, G., Geng, Y., Jin, Y., Shi, J., McFarland, K., Magleby, K. L., Salkoff, L. & Cui, J., Mar 6 2017, In: The Journal of general physiology. 149, 3, p. 373-387 15 p.

EJCB – Molecular basis of protein fates in the secretory and endocytic pathways, and beyond

Couture, F., Jansen, A. M., Taghert, P. & Brix, K., Aug 2017, In: European journal of cell biology. 96, 5, p. 369-371 3 p.

Enhanced sleep reverses memory deficits and underlying pathology in drosophila models of Alzheimer’s disease

Dissel, S., Klose, M., Donlea, J., Cao, L., English, D., Winsky-Sommerer, R., van Swinderen, B. & Shaw, P. J., 2017, In: Neurobiology of Sleep and Circadian Rhythms. 2, p. 15-26 12 p.

Facing the facts: The Runx2 gene is associated with variation in facial morphology in primates

Ritzman, T. B., Banovich, N., Buss, K. P., Guida, J., Rubel, M. A., Pinney, J., Khang, B., Ravosa, M. J. & Stone, A. C., Oct 2017, In: Journal of Human Evolution. 111, p. 139-151 13 p.

GABA-B controls persistent Na+ current and coupled Na+-activated K+ current

Li, P., Stewart, R., Butler, A., Gonzalez-Cota, A. L., Harmon, S. & Salkoff, L., 2017, In: eNeuro. 4, 3, e0114-17.2017.

Ghosts in the Machine II: Neural correlates of memory interference from the previous trial

Papadimitriou, C., White, R. L. & Snyder, L. H., 2017, In: Cerebral Cortex. 27, 4, p. 2513-2527 15 p.

Group and individual variability in mouse pup isolation calls recorded on the same day show stability

Barnes, T. D., Rieger, M. A., Dougherty, J. D. & Holy, T. E., Dec 15 2017, In: Frontiers in Behavioral Neuroscience. 11, 243.

HID-1 controls formation of large dense core vesicles by influencing cargo sorting and trans-Golgi network acidification

Hummer, B. H., De Leeuw, N. F., Burns, C., Chen, L., Joens, M. S., Hosford, B., Fitzpatrick, J. A. J. & Asensio, C. S., Dec 2017, In: Molecular biology of the cell. 28, 26, p. 3870-3880 11 p.

Identification of axon growth promoters in the secretome of the deer antler velvet

Pita-Thomas, W., Barroso-García, G., Moral, V., Hackett, A. R., Cavalli, V. & Nieto-Diaz, M., Jan 6 2017, In: Neuroscience. 340, p. 333-344 12 p.

Identification of genes that maintain behavioral and structural plasticity during sleep loss

Seugnet, L., Dissel, S., Thimgan, M., Cao, L. & Shaw, P. J., Oct 23 2017, In: Frontiers in Neural Circuits. 11, 79.

Improved tractography using asymmetric fibre orientation distributions

Bastiani, M., Cottaar, M., Dikranian, K., Ghosh, A., Zhang, H., Alexander, D. C., Behrens, T. E., Jbabdi, S. & Sotiropoulos, S. N., Sep 2017, In: NeuroImage. 158, p. 205-218 14 p

Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

Zhao, G., Vatanen, T., Droit, L., Park, A., Kostic, A. D., Poon, T. W., Vlamakis, H., Siljander, H., Härkönen, T., Hämäläinen, A. M., Peet, A., Tillmann, V., Ilonen, J., Wang, D., Knip, M., Xavier, R. J. & Virgin, H. W., Jul 25 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 30, p. E6166-E6175

Isolation of a simian immunodeficiency virus from a malbrouck (Chlorocebus cynosuros)

Carr, M., Kawaguchi, A., Sasaki, M., Gonzalez, G., Ito, K., Thomas, Y., Hang’ombe, B. M., Mweene, A. S., Zhao, G.Wang, D., Orba, Y., Ishii, A. & Sawa, H., Feb 1 2017, In: Archives of Virology. 162, 2, p. 543-548 6 p.

Knockout of lysosomal enzyme-targeting gene causes abnormalities in mouse pup isolation calls

Barnes, T. D. & Holy, T. E., Jan 4 2017, In: Frontiers in Behavioral Neuroscience. 10, 237.

Mechanisms Associated with Activation of Intracellular Metabotropic Glutamate Receptor, mGluR5

Jong, Y. J. I. & O’Malley, K. L., Jan 1 2017, In: Neurochemical Research. 42, 1, p. 166-172 7 p.

Optimal coding and neuronal adaptation in economic decisions

Rustichini, A., Conen, K. E., Cai, X. & Padoa-Schioppa, C., Dec 1 2017, In: Nature communications. 8, 1, 1208.

Orbitofrontal Cortex: A Neural Circuit for Economic Decisions

Padoa-Schioppa, C. & Conen, K. E., Nov 15 2017, In: Neuron. 96, 4, p. 736-754 19 p.

Oscillatory brain activity in spontaneous and induced sleep stages in flies

Yap, M. H. W., Grabowska, M. J., Rohrscheib, C., Jeans, R., Troup, M., Paulk, A. C., Van Alphen, B., Shaw, P. J. & Van Swinderen, B., Dec 1 2017, In: Nature communications. 8, 1, 1815.

Reward Size Informs Repeat-Switch Decisions and Strongly Modulates the Activity of Neurons in Parietal Cortex

Kubanek, J. & Snyder, L. H., Jan 1 2017, In: Cerebral Cortex. 27, 1, p. 447-459 13 p.

RNF8/UBC13 ubiquitin signaling suppresses synapse formation in the mammalian brain

Valnegri, P., Huang, J., Yamada, T., Yang, Y., Mejia, L. A., Cho, H. Y., Oldenborg, A. & Bonni, A., Dec 1 2017, In: Nature communications. 8, 1, 1271.

Sequences within the C terminus of the metabotropic glutamate receptor 5 (mGluR5) are responsible for inner nuclear membrane localization

Sergin, I., Jong, Y. J. I., Harmon, S. K., Kumar, V. & O’Malley, K. L., Mar 3 2017, In: Journal of Biological Chemistry. 292, 9, p. 3637-3655 19 p.

Statoviruses, A novel taxon of RNA viruses present in the gastrointestinal tracts of diverse mammals

Janowski, A. B., Krishnamurthy, S. R., Lim, E. S., Zhao, G., Brenchley, J. M., Barouch, D. H., Thakwalakwa, C., Manary, M. J.Holtz, L. R. & Wang, D., Apr 1 2017, In: Virology. 504, p. 36-44 9 p.

Targeting OSMR in glioma stem cells

Mohan, S., Bonni, A. & Jahani-Asl, A., 2017, In: Oncotarget. 8, 10, p. 16103-16104 2 p.

The autism-linked UBE3A T485A mutant E3 ubiquitin ligase activates the Wnt/β-catenin pathway by inhibiting the proteasome

Yi, J. J., Paranjape, S. R., Walker, M. P., Choudhury, R., Wolter, J. M., Fragola, G., Emanuele, M. J., Major, M. B. & Zylka, M. J., Jul 21 2017, In: Journal of Biological Chemistry. 292, 30, p. 12503-12515 13 p.

The Brain Analysis Library of Spatial maps and Atlases (BALSA) database

Van Essen, D. C., Smith, J., Glasser, M. F., Elam, J., Donahue, C. J., Dierker, D. L., Reid, E. K., Coalson, T. & Harwell, J., Jan 1 2017, In: NeuroImage. 144, p. 270-274 5 p.

The heritability of multi-modal connectivity in human brain activity

Colclough, G. L., Smith, S. M., Nichols, T. E., Winkler, A. M., Sotiropoulos, S. N., Glasser, M. F., Van Essen, D. C. & Woolrich, M. W., Jul 26 2017, In: eLife. 6, e20178

The performance of heat-treated silcrete backed pieces in actualistic and controlled complex projectile experiments

Schoville, B. J., Wilkins, J., Ritzman, T., Oestmo, S. & Brown, K. S., Aug 2017, In: Journal of Archaeological Science: Reports. 14, p. 302-317 16 p.

The predictive nature of transcript expression levels on protein expression in adult human brain

Bauernfeind, A. L. & Babbitt, C. C., Apr 24 2017, In: BMC genomics. 18, 1, 322.

Using rotary shadow electron microscopy to characterize semaphorin-mediated growth cone collapse

Bridgman, P. C., 2017, In: Methods in Molecular Biology. 1493, p. 185-194 10 p.

VirusSeeker, a computational pipeline for virus discovery and virome composition analysis

Zhao, G., Wu, G., Lim, E. S., Droit, L., Krishnamurthy, S., Barouch, D. H., Virgin, H. W. & Wang, D., Mar 1 2017, In: Virology. 503, p. 21-30 10 p.

The convergent roles of the nuclear factor I transcription factors in development and cancer

Chen, K. S., Lim, J. W. C., Richards, L. J. & Bunt, J., Dec 1 2017, In: Cancer Letters. 410, p. 124-138 15 p.

Patterns of transcriptional parallelism and variation in the developing olfactory system of Drosophila species

Wern Pan, J., Li, Q., Barish, S., Okuwa, S., Zhao, S., Soeder, C., Kanke, M., Jones, C. D. & Volkan, P. C., Dec 1 2017, In: Scientific reports. 7, 1, 8804.

Functional networks from inverse modeling of neural population activity

Cocco, S., Monasson, R., Posani, L. & Tavoni, G., Jun 2017, In: Current Opinion in Systems Biology. 3, p. 103-110 8 p.

GDF15 is elevated in mice following retinal ganglion cell death and in glaucoma patients

Ban, N., Siegfried, C. J., Lin, J. B., Shui, Y. B., Sein, J., Pita-Thomas, W., Sene, A., Santeford, A., Gordon, M., Lamb, R., Dong, Z., Kelly, S. C., Cavalli, V.Yoshino, J. & Apte, R. S., May 4 2017, In: JCI Insight. 2, 9

Reducing the burden of neurological disease and mental illness

Double, K. L. & Richards, L. J., May 1 2017, In: Medical Journal of Australia. 206, 8, p. 341-342 2 p.

Transcriptional profiling of olfactory system development identifies distal antenna as a regulator of subset of neuronal fates

Barish, S., Li, Q., Pan, J. W., Soeder, C., Jones, C. & Volkan, P. C., Jan 19 2017, In: Scientific reports. 7, 40873.


A decade of the anaphase-promoting complex in the nervous system

Huang, J. & Bonni, A., Mar 15 2016, In: Genes and Development. 30, 6, p. 622-638 17 p.

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

Monaco, C. L., Gootenberg, D. B., Zhao, G.Handley, S. A., Ghebremichael, M. S., Lim, E. S., Lankowski, A., Baldridge, M. T., Wilen, C. B., Flagg, M., Norman, J. M., Keller, B. C., Luévano, J. M., Wang, D., Boum, Y., Martin, J. N., Hunt, P. W., Bangsberg, D. R., Siedner, M. J., Kwon, D. S., Virgin, S., Mar 9 2016, In: Cell Host and Microbe. 19, 3, p. 311-322 12 p.

A multi-modal parcellation of human cerebral cortex

Glasser, M. F., Coalson, T. S., Robinson, E. C., Hacker, C. D., Harwell, J., Yacoub, E., Ugurbil, K., Andersson, J., Beckmann, C. F., Jenkinson, M., Smith, S. M. & Van Essen, D. C., Aug 3 2016, In: Nature. 536, 7615, p. 171-178 8 p.

A Mutation Associated with Stuttering Alters Mouse Pup Ultrasonic Vocalizations

Barnes, T. D., Wozniak, D. F., Gutierrez, J., Han, T. U., Drayna, D. & Holy, T. E., Apr 25 2016, In: Current Biology. 26, 8, p. 1009-1018 10 p.

Chromatin remodeling inactivates Activity genes and regulates neural coding

Yang, Y., Yamada, T., Hill, K. K., Hemberg, M., Reddy, N. C., Cho, H. Y., Guthrie, A. N., Oldenborg, A., Heiney, S. A., Ohmae, S., Medina, J. F., Holy, T. E. & Bonni, A., Jul 15 2016, In: Science. 353, 6296, p. 300-306 7 p.

Comment on “principles of connectivity among morphologically defined cell types in adult neocortex”

Barth, A., Burkhalter, A., Callaway, E. M., Connors, B. W., Cauli, B., DeFelipe, J., Feldmeyer, D., Freund, T., Kawaguchi, Y., Kisvarday, Z., Kubota, Y., McBain, C., Oberlaender, M., Rossier, J., Rudy, B., Staiger, J. F., Somogyi, P., Tamas, G. & Yuste, R., Sep 9 2016, In: Science. 353, 6304, 1108-a.

Comparison of cortical folding measures for evaluation of developing human brain

Shimony, J. S.Smyser, C. D., Wideman, G., Alexopoulos, D., Hill, J., Harwell, J., Dierker, D., Van Essen, D. C., Inder, T. E. & Neil, J. J., Jan 15 2016, In: NeuroImage. 125, p. 780-790 11 p

Complexities of X chromosome inactivation status in female human induced pluripotent stem cells – A brief review and scientific update for autism research

Dandulakis, M. G., Meganathan, K., Kroll, K. L., Bonni, A. & Constantino, J. N., Jun 9 2016, In: Journal of neurodevelopmental disorders. 8, 1, 22.

ConnectomeDB-Sharing human brain connectivity data

Hodge, M. R., Horton, W., Brown, T., Herrick, R., Olsen, T., Hileman, M. E., McKay, M., Archie, K. A., Cler, E., Harms, M. P., Burgess, G. C., Glasser, M. F., Elam, J. S., Curtiss, S. W., Barch, D. M., Oostenveld, R., Larson-Prior, L. J., Ugurbil, K., Van Essen, D. C. & Marcus, D. S., Jan 1 2016, In: NeuroImage. 124, p. 1102-1107 6 p.

DNA methylation in the gene body influences MeCP2-mediated gene repression

Kinde, B., Wu, D. Y., Greenberg, M. E. & Gabel, H. W., Dec 27 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 52, p. 15114-15119 6 p.

Evolutionary Specializations of Human Brain Microstructure

Sherwood, C. C., Bauernfeind, A. L., Verendeev, A., Raghanti, M. A. & Hof, P. R., Jan 1 2016, Evolution of Nervous Systems: Second Edition.Elsevier Inc., Vol. 4-4. p. 121-139 19 p.

Experience-Dependent Plasticity Drives Individual Differences in Pheromone-Sensing Neurons

Xu, P. S., Lee, D. & Holy, T. E., Aug 17 2016, In: Neuron. 91, 4, p. 878-892 15 p.

Functional PDF Signaling in the Drosophila Circadian Neural Circuit Is Gated by Ral A-Dependent Modulation

Klose, M., Duvall, L. B., Li, W., Liang, X., Ren, C., Steinbach, J. H. & Taghert, P. H., May 18 2016, In: Neuron. 90, 4, p. 781-794 14 p.

Gpr126/Adgrg6 has Schwann cell autonomous and nonautonomous functions in peripheral nerve injury and repair

Mogha, A., Harty, B. L., Carlin, D., Joseph, J., Sanchez, N. E., Suter, U., Piao, X., Cavalli, V. & Monk, K. R., Dec 7 2016, In: Journal of Neuroscience. 36, 49, p. 12351-12367 17 p.

Hyperexpansion of RNA Bacteriophage Diversity

Krishnamurthy, S. R., Janowski, A. B.Zhao, G., Barouch, D. & Wang, D., Mar 24 2016, In: PLoS biology. 14, 3, e1002409.

Internal carotid arterial canal size and scaling in Euarchonta: Re-assessing implications for arterial patency and phylogenetic relationships in early fossil primates

Boyer, D. M., Kirk, E. C., Silcox, M. T., Gunnell, G. F., Gilbert, C. C., Yapuncich, G. S., Allen, K. L., Welch, E., Bloch, J. I., Gonzales, L. A., Kay, R. F. & Seiffert, E. R., Aug 1 2016, In: Journal of Human Evolution. 97, p. 123-144 22 p.

Intracellular mGluR5 plays a critical role in neuropathic pain

Vincent, K., Cornea, V. M., Jong, Y. J. I., Laferriere, A., Kumar, N., Mickeviciute, A., Fung, J. S. T., Bandegi, P., Ribeiro-Da-Silva, A., O’Malley, K. L. & Coderre, T. J., Feb 3 2016, In: Nature communications. 7, 10604.

Mandibular ramus shape of Australopithecus sediba suggests a single variable species

Ritzman, T. B., Terhune, C. E., Gunz, P. & Robinson, C. A., Nov 1 2016, In: Journal of Human Evolution. 100, p. 54-64 11 p.

Multiple mechanisms for processing reward uncertainty in the primate basal forebrain

Ledbetter, N. M., Chen, C. D. & Monosov, I. E., Jul 27 2016, In: Journal of Neuroscience. 36, 30, p. 7852-7864 13 p.

Nerve growth factor stimulates axon outgrowth through negative regulation of growth cone actomyosin restraint of microtubule advance

Turney, S. G., Ahmed, M., Chandrasekar, I., Wysolmerski, R. B., Goeckeler, Z. M., Rioux, R. M., Whitesides, G. M. & Bridgman, P. C., Feb 1 2016, In: Molecular biology of the cell. 27, 3, p. 500-517 18 p.

Neuronal remapping and circuit persistence in economic decisions

Xie, J. & Padoa-Schioppa, C., Apr 26 2016, In: Nature neuroscience. 19, 6, p. 855-861 7 p.

Neurons in the primate dorsal striatum signal the uncertainty of object-reward associations

White, J. K. & Monosov, I. E., Sep 14 2016, In: Nature communications. 7, 12735.

Neuroscience: Flipping the sleep switch

Dissel, S. & Shaw, P. J., Aug 3 2016, In: Nature. 536, 7616, p. 278-280 3 p.

Olfactory bulb connectomics: a silver lining

Holy, T. E., May 26 2016, In: Nature neuroscience. 19, 6, p. 767-768 2 p.

Oxygen Level and LFP in Task-Positive and Task-Negative Areas: Bridging BOLD fMRI and Electrophysiology

Bentley, W. J., Li, J. M., Snyder, A. Z.Raichle, M. E. & Snyder, L. H., Jan 1 2016, In: Cerebral Cortex. 26, 1, p. 346-357 12 p.

Parcellations and connectivity patterns in human and macaque cerebral cortex

Van Essen, D. C., Donahue, C., Dierker, D. L. & Glasser, M. F., 2016, Research and Perspectives in Neurosciences. 9783319277769 ed. Springer Verlag, p. 89-106 18 p. (Research and Perspectives in Neurosciences; no. 9783319277769).

Pathogenesis of Börjeson-Forssman-Lehmann syndrome: Insights from PHF6 function

Jahani-Asl, A., Cheng, C., Zhang, C. & Bonni, A., Dec 1 2016, In: Neurobiology of Disease. 96, p. 227-235 9 p.

Recruitment of inhibition and excitation across mouse visual cortex depends on the hierarchy of interconnecting areas

D’Souza, R. D., Meier, A. M., Bista, P., Wang, Q. & Burkhalter, A., Sep 26 2016, In: eLife. 5, September2016, e19332.

Regenerated sciatic nerve axons stimulated through a chronically implanted macro-sieve electrode

MacEwan, M. R., Zellmer, E. R., Wheeler, J. J., Burton, H. & Moran, D. W., 2016, In: Frontiers in Neuroscience. 10, DEC, 557.

Region-Specific Summation Patterns Inform the Role of Cortical Areas in Selecting Motor Plans

Chang, S. W. C., Calton, J. L., Lawrence, B. M., Dickinson, A. R. & Snyder, L. H., May 1 2016, In: Cerebral Cortex. 26, 5, p. 2154-2166 13 p.

Signaling over distances

Saito, A. & Cavalli, V., Feb 2016, In: Molecular and Cellular Proteomics. 15, 2, p. 382-393 12 p.

SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination

Handley, S. A., Desai, C., Zhao, G., Droit, L., Monaco, C. L., Schroeder, A. C., Nkolola, J. P., Norman, M. E., Miller, A. D., Wang, D., Barouch, D. H. & Virgin, H. W., Mar 9 2016, In: Cell Host and Microbe. 19, 3, p. 323-335 13 p.

Sleep and memory formation in Drosophila

Dissel, S. & Shaw, P. J., Jan 1 2016, The Curated Reference Collection in Neuroscience and Biobehavioral Psychology.Elsevier Science Ltd., p. 517-527 11 p.

SLO2 Channels are inhibited by all divalent cations that activate SLO1 K- channels

Budelli, G., Sun, Q., Ferreira, J., Butler, A., Santi, C. M. & Salkoff, L., Apr 1 2016, In: Journal of Biological Chemistry. 291, 14, p. 7347-7356 10 p.

Spatial Embedding and Wiring Cost Constrain the Functional Layout of the Cortical Network of Rodents and Primates

Horvát, S., Gămănuț, R., Ercsey-Ravasz, M., Magrou, L., Gămănuț, B., Van Essen, D. C.Burkhalter, A., Knoblauch, K., Toroczkai, Z. & Kennedy, H., Jul 21 2016, In: PLoS biology. 14, 7, e1002512.

Surgical extraction of human dorsal root ganglia from organ donors and preparation of primary sensory neuron cultures

Valtcheva, M. V., Copits, B. A., Davidson, S., Sheahan, T. D., Pullen, M. Y., McCall, J. G.Dikranian, K. & Gereau, R. W., Oct 1 2016, In: Nature Protocols. 11, 10, p. 1877-1888 12 p.

Synchronous drosophila circadian pacemakers display nonsynchronous Ca2+ rhythms in vivo

Liang, X., Holy, T. E. & Taghert, P. H., Feb 26 2016, In: Science. 351, 6276, p. 976-981 6 p.

The dynamic nature of value-based decisions

Conen, K. E. & Padoa-Schioppa, C., Jul 1 2016, In: Nature neuroscience. 19, 7, p. 866-867 2 p.

The Human Connectome Project’s neuroimaging approach

Glasser, M. F., Smith, S. M., Marcus, D. S., Andersson, J. L. R., Auerbach, E. J., Behrens, T. E. J., Coalson, T. S., Harms, M. P., Jenkinson, M., Moeller, S., Robinson, E. C., Sotiropoulos, S. N., Xu, J., Yacoub, E., Ugurbil, K. & Van Essen, D. C., Sep 1 2016, In: Nature neuroscience. 19, 9, p. 1175-1187 13 p.

The network for intracortical communication in mouse visual cortex

Burkhalter, A., 2016, Research and Perspectives in Neurosciences. 9783319277769 ed. Springer Verlag, p. 31-43 13 p. (Research and Perspectives in Neurosciences; no. 9783319277769).

The splice isoforms of the Drosophila ecdysis triggering hormone receptor have developmentally distinct roles

Diao, F., Mena, W., Shi, J., Park, D., Diao, F., Taghert, P., Ewer, J. & White, B. H., Jan 2016, In: Genetics. 202, 1, p. 175-189 15 p.

Using diffusion tractography to predict cortical connection strength and distance: A quantitative comparison with tracers in the monkey

Donahue, C. J., Sotiropoulos, S. N., Jbabdi, S., Hernandez-Fernandez, M., Behrens, T. E., Dyrby, T. B., Coalson, T., Kennedy, H., Knoblauch, K., Van Essen, D. C. & Glasser, M. F., Jun 22 2016, In: Journal of Neuroscience. 36, 25, p. 6758-6770 13 p.

Wear and its effects on dental topography measures in howling monkeys (Alouatta palliata)

Pampush, J. D., Spradley, J. P., Morse, P. E., Harrington, A. R., Allen, K. L., Boyer, D. M. & Kay, R. F., Dec 1 2016, In: American Journal of Physical Anthropology. 161, 4, p. 705-721 17 p.

Functional characterization of the dural sinuses as a neuroimmune interface

Rustenhoven, J., Drieu, A., Mamuladze, T., de Lima, K. A., Dykstra, T., Wall, M., Papadopoulos, Z., Kanamori, M., Salvador, A. F., Baker, W., Lemieux, M., Da Mesquita, S., Cugurra, A., Fitzpatrick, J., Sviben, S., Kossina, R., Bayguinov, P., Townsend, R. R., Zhang, Q., Erdmann-Gilmore, P., Smirnov, I., Beatriz-Lopes, M., Herz, J.Kipnis, J., Feb 18 2021, In: Cell. 184, 4, p. 1000-1016.e27

In Vivo Gene Delivery of STC2 Promotes Axon Regeneration in Sciatic Nerves

Jeon, Y., Shin, J. E., Kwon, M., Cho, E., Cavalli, V. & Cho, Y., Feb 2021, In: Molecular Neurobiology. 58, 2, p. 750-760 11 p.