Publications

MeCP2 represses the activity of topoisomerase IIβ in long neuronal genes

Nettles SA, Ikeuchi Y, Lefton KB, Abbasi L, Erickson A, Agwu C, Papouin T, Bonni A, Gabel HW. December 12, 2023. In: Cell Rep. 42(12):113538. doi: 10.1016/j.celrep.2023.113538. Online ahead of print.

Distinct disease mutations in DNMT3A result in a spectrum of behavioral, epigenetic, and transcriptional deficits

Beard DC, Zhang X, Wu DY, Martin JR, Erickson A, Boua JV, Hamagami N, Swift RG, McCullough KB, Ge X, Bell-Hensley A, Zheng H, Palmer CW, Fuhler NA, Lawrence AB, Hill CA, Papouin T, Noguchi KK, McAlinden A, Garbow JR, Dougherty JD, Maloney SE,  Gabel HW. November 10, 2023. In: Cell Rep. 42(11):113411. doi: 10.1016/j.celrep.2023.113411. Online ahead of print.

Dominant negative variants in KIF5B cause osteogenesis imperfecta via down regulation of mTOR signaling

Marom R, Zhang B, Washington ME, Song I-W, Burrage LC, Rossi VC, Berrier AS, Lindsey A, Lesinski J, Nonet ML, Chen J, Baldridge D, Silverman GA, Sutton VR, Rosenfeld JA, Tran AA, Hicks MJ, Murdock DR, Dai H, M, Jhangiani SN, Muzny DM, Gibbs RA, Caswell R, Pottinger C, Cilliers D, Stals K; Undiagnosed Diseases Network; Eyre D, Krakow D, Schedl T, Pak SC, Lee BH. November 7, 2023. In: PLoS Genet. 19(11):e1011005. doi: 10.1371/journal.pgen.1011005. Online ahead of print.

UNC-49 is a redox-sensitive GABA_A receptor that regulates the mitochondrial unfolded protein response cell nonautonomously

Pohl F, Germann AL, Mao J, Hou S, Bakare B, Kong Thoo Lin P, Yates K, ML Nonet, Akk G, Kornfeld K, Held JM. November 3, 2023. In: Sci Adv. 9(44):eadh2584. doi: 10.1126/sciadv.adh2584. Epub 2023 Nov 1.

Experimentally induced active and quiet sleep engage non-overlapping transcriptional programs in Drosophila

Anthoney N, Tainton-Heap L, Luong H, Notaras E, Kewin AB, Zhao Q, Perry T, Batterham P, Shaw PJ, van Swinderen B. November 1, 2023. In: eLife. 12:RP88198. doi: 10.7554/eLife.88198.

Loss-of-function variants in ZEB1 cause dominant anomalies of the corpus callosum with favourable cognitive prognosis

Heide S, Argilli E, Valence S, Boutaud L, Roux N, Mignot C, Nava C, Keren B, Giraudat K, Faudet A, Gerasimenko A, Garel C, Blondiaux E, Rastetter A, Grevent D, Le C, Mackenzie L, Richards L, Attié-Bitach T, Depienne C, Sherr E, Héron D. October 19, 2023. In: J Med Genet. jmg-2023-109293. doi: 10.1136/jmg-2023-109293. Online ahead of print.

A conceptual framework for astrocyte function

Murphy-Royal C, Ching S, Papouin T. October 19, 2023. In: Nat Neurosci. doi: 10.1038/s41593-023-01448-8. Online ahead of print.

Non-uniform temporal scaling of developmental processes in the mammalian cortex

Paolino A, Haines EH, Bailey EJ, Black DA, Moey C, García-Moreno F, Richards LJ, Suárez R, Fenlon LR. September 23, 2023. In: Nat Commun. 14(1):5950. doi: 10.1038/s41467-023-41652-5.

Single genomic enhancers drive experience-dependent GABAergic plasticity to maintain sensory processing in the adult cortex

Roethler O, Zohar E, Cohen-Kashi Malina K, Bitan L, Gabel HW, Spiegel I. September 6, 2023. In: Neuron. 111(17):2693-2708.e8. doi: 10.1016/j.neuron.2023.05.026. Epub 2023 Jun 23.

Organization of vestibular circuits for postural control in zebrafish

Liu Z, Bagnall MW. August 25, 2023. In: Curr Opin Neurobiol. 82:102776. doi: 10.1016/j.conb.2023.102776. Online ahead of print.

Aicardi Syndrome is a genetically heterogeneous disorder

Ha TT, Burgess R, Newman M, Moey C, Mandelstam SA, Gardner AE, Ivancevic AM, Pham D, Kumar R, Smith N, Patel C, Malone S, Ryan MM, Calvert S, van Eyk CL, Lardelli M, Berkovic SF, Leventer RJ, Richards LJ, Scheffer IE, Gecz J, Corbett MA. July 31, 2023. In: Genes (Basel). 14(8):1565. doi: 10.3390/genes14081565.

Striatal mGlu₅-mediated synaptic plasticity is independently regulated by location-specific receptor pools and divergent signaling pathways

Jong Y-JI, Izumi Y, Harmon SK, Zorumski CF, O’Malley KL. June 22, 2023. In: J Biol Chem. 104949. doi: 10.1016/j.jbc.2023.104949. Online ahead of print.

Single genomic enhancers drive experience-dependent GABAergic plasticity to maintain sensory processing in the adult cortex

Roethler O, Zohar E, Cohen-Kashi Malina K, Bitan L, Gabel HW, Spiegel I. June 20, 2023. In: Neuron. S0896-6273(23)00399-9. doi: 10.1016/j.neuron.2023.05.026. Online ahead of print.

Local translation in microglial processes is required for efficient phagocytosis

Vasek MJ, Mueller SM, Fass SB, Deajon-Jackson JD, Liu Y, Crosby HW, Koester SK, Yi J, Li Q, Dougherty JD. June 5, 2023. In: Nat Neurosci. doi: 10.1038/s41593-023-01353-0. Online ahead of print.

Cortical activity emerges in region-specific patterns during early brain development

Suárez R, Bluett T, McCullough MH, Avitan L, Black DA, Paolino A, Fenlon LR, Goodhill GJ, Richards LJ. May 30, 2023. In: PNAS. 120(22):e2208654120. doi: 10.1073/pnas.2208654120. Epub 2023 May 22.

Sleep deprivation, sleep fragmentation, and social jet lag increase temperature preference in Drosophila

Roach ST, Ford MC, Simhambhatla V, Loutrianakis V, Farah H, Li Z, Periandri EM, Abdalla D, Huang I, Kalra A, Shaw PJ. May 19, 2023. In: Front Neurosci. 17:1175478. doi: 10.3389/fnins.2023.1175478. eCollection 2023.

Local and long-distance organization of prefrontal cortex circuits in the marmoset brain

Watakabe A, Skibbe H, Nakae K, Abe H, Ichinohe N, Rachmadi MF, Wang J, Takaji M, Mizukami H, Woodward A, Gong R, Hata J, Van Essen DC, Okano H, Ishii S, Yamamori T. May 9, 2023. In: Neuron. S0896-6273(23)00338-0. doi: 10.1016/j.neuron.2023.04.028. Online ahead of print.

A Cre-deleter specific for embryo-derived brain macrophages reveals distinct features of microglia and border macrophages

Brioschi S, Belk JA, Peng V, Molgora M, Rodrigues PF, Nguyen KM, Wang S, Du S, Wang W-L, Grajales-Reyes GE, Ponce JM, Yuede CM, Li Q, Baer JM, DeNardo DG, Gilfillan S, Cella M, Satpathy AT, Colonna M. May 9, 2023. In: Immunity. 56(5):1027-1045.e8. doi: 10.1016/j.immuni.2023.01.028. Epub 2023 Feb 14.

NSD1 deposits histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons

Hamagami N, Wu DY, Clemens AW, Nettles SA, Li A, Gabel HW. May 4, 2023. In: Mol Cell. 83(9):1412-1428.e7. doi: 10.1016/j.molcel.2023.04.001. Epub 2023 Apr 24.

Rapid generation of C. elegans single-copy transgenes combining RMCE and drug selection

Nonet ML. April 20, 2023. In: Genetics. iyad072. doi: 10.1093/genetics/iyad072. Online ahead of print.

Whole-brain imaging of freely-moving zebrafish

Hasani H, Sun J, Zhu SI, Rong Q, Willomitzer F, Amor R, McConnell G, Cossairt O, Goodhill GJ. April 17, 2023. In: Front Neurosci. 17:1127574. doi: 10.3389/fnins.2023.1127574. eCollection 2023.

Spike-phase coupling patterns reveal laminar identity in primate cortex

Davis ZW, Dotson NM, Franken TP, Muller L, Reynolds JH. April 17, 2023. In: eLife. 12:e84512. doi: 10.7554/eLife.84512. Online ahead of print.

Structural gray matter alterations in glioblastoma and high-grade glioma-A potential biomarker of survival

Lamichhane B, Luckett PH, Dierker D, Park KY, Burton H, Olufawo M, Trevino G, Lee JJ, Daniel AGS, Hacker CD, Marcus DS, Shimony JS, Leuthardt EC. April 14, 2023. In: Neurooncol Adv. 5(1):vdad034. doi: 10.1093/noajnl/vdad034. eCollection 2023 Jan-Dec.

Julia for biologists

Roesch E, Greener JG, MacLean AL, Nassar H, Rackauckas C, Holy TE, Stumpf MPH. April 6, 2023. In: Nature Methods. doi: 10.1038/s41592-023-01832-z. Online ahead of print.

Stromal and therapy-induced macrophage proliferation promotes PDAC progression and susceptibility to innate immunotherapy

Zuo C, Baer JM, Knolhoff BL, Belle JI, Liu X, Alarcon De La Lastra A, Fu C, Hogg GD, Kingston NL, Breden MA, Dodhiawala PB, Zhou DC, Lander VE, James CA, Ding L, Lim K-H, Fields RC, Hawkins WG, Weber JD, Zhao G, DeNardo DG. June 5, 2023. In: J Exp Med. 220(6):e20212062. doi: 10.1084/jem.20212062. Epub 2023 Mar 23.

BK channels of five different subunit combinations underlie the de novo KCNMA1 G375R channelopathy

Geng Y, Li P, Butler A, Wang B, Salkoff L, Magleby KL. May 1, 2023. In: J Gen Physiol. 155(5):e202213302. doi: 10.1085/jgp.202213302. Epub 2023 Mar 30.

Integration of feedforward and feedback information streams in the modular architecture of mouse visual cortex

Burkhalter A, D’Souza RD, Ji W, Meier AM. March 27, 2023. In: Ann Rev Neurosci. doi:10.1146/annurev-neuro-083122-021241. Online ahead of print.

Neuronal birthdate reveals topography in a vestibular brainstem circuit for gaze stabilization

Goldblatt D, Huang S, Greaney MR, Hamling KR, Voleti V, Perez-Campos C, Patel KB, Li W, Hillman EMC, Bagnall MW, Schoppik D. March 7, 2023. In: Current Biology. S0960-9822(23)00188-4. doi: 10.1016/j.cub.2023.02.048. Online ahead of print.

A response to claims of emergent intelligence and sentience in a dish

Balci F, Ben Hamed S, Boraud T, Bouret S, Brochier T, Brun C, Cohen JY, Coutureau E, Deffains M, Doyère V, Gregoriou GG, Heimel JA, Kilavik BE, Lee D, Leuthardt EC, Mainen ZF, Mathis M, IE Monosov, Naudé J, Orsborn AL, Padoa-Schioppa C, Procyk E, Sabatini B, Sallet J, Sandi C, Schall JD, Soltani A, Svoboda K, Wilson CRE, Zimmermann J. March 1, 2023. In: Neuron. 111(5):604-605. doi: 10.1016/j.neuron.2023.02.009.

Human striatal glia differentially contribute to AD- and PD-specific neurodegeneration

Xu J, Farsad HL, Hou Y, Barclay K, Lopez BA, Yamada S, Saliu IO, Shi Y, Knight WC, Bateman RJ, Benzinger TLS, Yi JJ, Li Q, Wang T, Perlmutter JS, Morris JC, Zhao Z. March, 2023. In: Nature Aging. 3(3):346-365. doi: 10.1038/s43587-023-00363-8. Epub 2023 Feb 9.

Shared and disease-specific glial gene expression changes in neurodegenerative diseases

Zhao G. March, 2023. In: Nature Aging. 3(3):246-247. doi: 10.1038/s43587-023-00378-1. Epub 2023 Feb 13.

Spinal interneurons: Diversity and connectivity in motor control

Sengupta M, Bagnall MW. Feb 28, 2023. In: Annu Rev Neurosci. doi: 10.1146/annurev-neuro-083122-025325. Online ahead of print.

How to make a vampire

Smith TD, Prufrock KA, DeLeon VB. Feb 20, 2023. In: Anat Rec (Hoboken). doi: 10.1002/ar.25179. Online ahead of print.

Mirror movements and callosal dysgenesis in a family with a DCC mutation: Neuropsychological and neuroimaging outcomes

Knight JL, Barker MS, Edwards TJ, Barnby JM, Richards LJ, Robinson GA. Feb 19, 2023. In: Cortex. 161:38-50. doi: 10.1016/j.cortex.2023.01.008. Online ahead of print.

Self-renewing macrophages in dorsal root ganglia contribute to promote nerve regeneration

Feng R, Muraleedharan Saraswathy V, Mokalled MH, Cavalli V. Feb 14, 2023. In: PNAS. 120(7):e2215906120. doi: 10.1073/pnas.2215906120. Epub 2023 Feb 10.

From perception to behavior: The neural circuits underlying prey hunting in larval zebrafish

Zhu SI, Goodhill GJ. Feb 1, 2023. In: Front Neural Circuits. 17:1087993. doi: 10.3389/fncir.2023.1087993. eCollection 2023.

Age-related differences in resting-state functional connectivity from childhood to adolescence

Sanders AFP, Harms MP, Kandala S, Marek S, Somerville LH, Bookheimer SY, Dapretto M, Thomas KM, Van Essen DC, Yacoub E, Barch DM. February 1, 2023. In: Cereb Cortex. bhad011. doi: 10.1093/cercor/bhad011. Online ahead of print.

Gold nanoparticle-enhanced X-ray microtomography of the rodent reveals region-specific cerebrospinal fluid circulation in the brain

Pan S, Yang PH, DeFreitas D, Ramagiri S, Bayguinov PO, Hacker CD, Snyder AZ, Wilborn J, Huang H, Koller GM, Raval DK, Halupnik GL, Sviben, Achilefu S, Tang R, Haller G, Quirk JD, Fitzpatrick JAJ, Esakky P, Strahle JM. January 27, 2023. In: Nat Commun. 14(1):453. doi: 10.1038/s41467-023-36083-1.

Monosynaptic restriction of the anterograde herpes simplex virus strain H129 for neural circuit tracing

Fischer KB, Collins HK, Pang Y, Roy DS, Zhang Y, Feng G, Li S-J, Kepecs A, Callaway EM. January 6, 2023. In: J Comp Neurol. doi: 10.1002/cne.25451. Online ahead of print.

fmr1 mutation alters the early development of sensory coding and hunting and social behaviors in larval zebrafish

Zhu SI, McCullough MH, Pujic Z, Sibberas J, Sun B, Darveniza T, Bucknall B, Avitan L, Goodhill GJ. January 3, 2023. In: J Neurosci. JN-RM-1721-22. doi: 10.1523/JNEUROSCI.1721-22.2022. Online ahead of print.

Polyphasic circadian neural circuits drive differential activities in multiple downstream rhythmic centers

Liang X, Holy TE, Taghert PH. December 29, 2022. In: Curr Biol. S0960-9822(22)01961-3. doi: 10.1016/j.cub.2022.12.025. Online ahead of print.

Clonally related, Notch-differentiated spinal neurons integrate into distinct circuits

Bello-Rojas S, Bagnall MW. December 29, 2022. In: eLife. 11:e83680. doi: 10.7554/eLife.83680.

Knockout of TSC2 in Nav1.8+ neurons predisposes to the onset of normal weight obesity

Brazill JM, Shin D, Magee K, Majumdar A, Shen IR, Cavalli V, Scheller EL. December 28, 2022. In: Mol Metab. 101664. doi: 10.1016/j.molmet.2022.101664. Online ahead of print.

Primates chunk simultaneously-presented memoranda

Holmes CD, Ching S, Snyder LH. December 13, 2022. In: Front Behav Neurosci. 16:1060193. doi: 10.3389/fnbeh.2022.1060193. eCollection 2022.

Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment

Szadai Z, Pi H-J, Chevy Q, Ócsai K, Albeanu DF, Chiovini B, Szalay G, Katona G, Kepecs A, Rózsa B. November 23, 2022. In: eLife. 11:e78815. doi: 10.7554/eLife.78815.

Cortical adaptation of the night monkey to a nocturnal niche environment: a comparative non-invasive T1w/T2w myelin study

Ikeda T, Autio JA, Kawasaki A, Takeda C, Ose T, Takada M, Van Essen DC, Glasser MF, Hayashi T. November 18, 2022. In: Brain Struct Funct. doi: 10.1007/s00429-022-02591-x. Online ahead of print.

Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation

Petroff 2nd JT, Dietzen NM, Santiago-McRae E, Deng B, Washington MS, Chen LJ, Moreland KT, Deng Z, Rau M, Fitzpatrick JAJ, Yuan P, Joseph TT, Hénin J, Brannigan G, Cheng WWL. November 17, 2022. In: Nat Commun. 13(1):7017. doi: 10.1038/s41467-022-34813-5.

Dopamine in the rodent tail of striatum regulates behavioral variability in response to threatening novel objects

Pai J, Monosov IE. November 16, 2022. In: Neuron. 110(22):3653-3655. doi: 10.1016/j.neuron.2022.10.019.

Functional and clinical studies reveal pathophysiological complexity of CLCN4-related neurodevelopmental condition

Palmer EE, Pusch M … [35 authors] Richards LJ … [60 authors] Kalscheuer VM. November 16, 2022. In: Mol Psychiatry. doi: 10.1038/s41380-022-01852-9. Online ahead of print.

The zona incerta in control of novelty seeking and investigation across species

Monosov IE, Ogasawara T, Haber SN, Heimel JA, Ahmadlou M. November 15, 2022. In: Curr Opin Neurobiol. 77:102650. doi: 10.1016/j.conb.2022.102650. Online ahead of print.

Structural basis for mechanotransduction in a potassium-dependent mechanosensitive ion channel

Mount J, Maksaev G, Summers BT, Fitzpatrick JAJ, Yuan P. November 12, 2022. In: Nat Commun. 13(1):6904. doi: 10.1038/s41467-022-34737-0.

The incidence of candidate binding sites for β-arrestin in Drosophila neuropeptide GPCRs

Taghert PH. November 1, 2022. In: PLoS One. 17(11):e0275410. doi: 10.1371/journal.pone.0275410. eCollection 2022.

A scalable, cell-based method for the functional assessment of Ube3a variants

Stelzer JA, Yi JJ. October 10, 2022. In: J Vis Exp. 188. doi: 10.3791/64454.

Neurons that control walking go round in circles

Bagnall MW. October, 2022. In: Nature. 610(7932):453-454. doi: 10.1038/d41586-022-02238-1.

Cognition and the single neuron: How cell types construct the dynamic computations of frontal cortex

Christensen AJ, Ott T, Kepecs A. October 6, 2022. In: Curr Opin Neurobiol. 77:102630. doi: 10.1016/j.conb.2022.102630. Online ahead of print.

Sleep-promoting neurons remodel their response properties to calibrate sleep drive with environmental demands

Dissel S, Klose MK, van Swinderen B, Cao L, Ford M, Periandri EM, Jones JD, Li Z, Shaw PJ. September 29, 2022. In: PLoS Biology. 20(9):e3001797. doi: 10.1371/journal.pbio.3001797. eCollection 2022 Sep.

Laser stimulation of the skin for quantitative study of decision-making and motivation

Pai J, Ogasawara T, Bromberg-Martin ES, Ogasawara K, Gereau RW, Monosov IE. September 19, 2022. In: Cell Rep Methods. 2(9):100296. doi: 10.1016/j.crmeth.2022.100296.

Blocking CHOP-dependent TXNIP shuttling to mitochondria attenuates albuminuria and mitigates kidney injury in nephrotic syndrome

Park S-J, Kim Y, Li C, Suh J, Sivapackiam J, Goncalves TM, Jarad G, Zhao G, Urano F, Sharma V, Chen YM. Aug 30, 2022. In: PNAS. 119(35):e2116505119. doi: 10.1073/pnas.2116505119. Epub 2022 Aug 22.

Organization of the gravity-sensing system in zebrafish

Liu Z, Hildebrand DGC, Morgan JL, Jia Y, Slimmon N, Bagnall MW. August 27, 2022. In: Nature Communications. 13(1):5060. doi: 10.1038/s41467-022-32824-w.

Analysis of neuronal injury transcriptional response identifies CTCF and YY1 as co-operating factors regulating axon regeneration

Avraham O, Le J, Leahy K, Li T, Zhao G, Cavalli V. August 23, 2022. In: Front Mol Neuroscience. 15:967472. doi: 10.3389/fnmol.2022.967472. eCollection 2022.

Increased persuadability and credulity in people with corpus callosum dysgenesis

Barnby JM, Dean RJ, Burgess H, Kim J, Teunisse AK, Mackenzie L, Robinson GA, Dayan P, Richards LJ. August 6, 2022. In: Cortex. 155:251-263. doi: 10.1016/j.cortex.2022.07.009. Online ahead of print.

Developmental trajectories of cortical thickness by functional brain network: The roles of pubertal timing and socioeconomic status

Sanders AFP, Baum GL, Harms MP, Kandala S, Bookheimer SY, Dapretto M, Somerville LH, Thomas KM, Van Essen DC, Yacoub E, Barch DM. Aug 5, 2022. In: Dev Cogn Neurosci. 57:101145. doi: 10.1016/j.dcn.2022.101145. Online ahead of print.

Disease-associated mutations within the yeast DNAJB6 homolog Sis1 slow conformer-specific substrate processing and can be corrected by the modulation of nucleotide exchange factors

Bhadra AK, Rau MJ, Daw JA, Fitzpatrick JAJ, Weihl CC, True HL. Aug 5, 2022. In: Nat Commun. 13(1):4570. doi: 10.1038/s41467-022-32318-9.

Orbitofrontal cortex contributes to the comparison of values underlying economic choices

Ballesta S, Shi W, Padoa-Schioppa C. July 29, 2022. In: Nature Communications. 13:4405.

Donor macrophages modulate rejection after heart transplantation

Kopecky BJ, Dun H, Amrute JM, Lin C-Y, Bredemeyer AL, Terada Y, Bayguinov PO, Koenig AL, Frye CC, Fitzpatrick JAJ, Kreisel D, Lavine KJ. July 26, 2022. In: Circulation. 101161CIRCULATIONAHA121057400. doi: 10.1161/CIRCULATIONAHA.121.057400. Online ahead of print.

Monosynaptic targets of utricular afferents in the larval zebrafish

Jia Y, Bagnall MW. July 22, 2022. In: Front Neurol. 13:937054. doi: 10.3389/fneur.2022.937054. eCollection 2022.

Graded variation in T1w/T2w ratio during adolescence: Measurement, caveats, and implications for development of cortical myelin

Baum GL, Flournoy JC, Glasser MF, Harms MP, Mair P,Sanders AFP, Barch DM, Buckner RL, Bookheimer S, Dapretto M, Smith S, Thomas KM, Yacoub E, Van Essen DC, Somerville LH. July 20, 2022. In: J Neurosci. 42(29):5681-5694. doi: 10.1523/JNEUROSCI.2380-21.2022. Epub 2022 Jun 15.

Miswiring of Merkel cell and pruriceptive C fiber drives the itch-scratch cycle

Feng J, Zhao Y, Xie Z, Zang K, Sviben S, Hu X, Fitzpatrick JAJ, Wen L, Liu Y, Wang T, Lawson K, Liu Q, Yan Y, Dong X, Han L, Wu GF, Kim BS, Hu H. Jul 13, 2022. In: Science Translational Medicine. 14(653):eabn4819. doi: 10.1126/scitranslmed.abn4819. Epub 2022 Jul 13.

Biomechanical models and mechanisms of cellular morphogenesis and cerebral cortical expansion and folding

Van Essen DC. July 12, 2022. In: Semin Cell Dev Biol. S1084-9521(22)00217-8. doi: 10.1016/j.semcdb.2022.06.007. Online ahead of print.

Cryo-EM structure of the prothrombin-prothrombinase complex

Ruben EA, Summers B,  Rau MJ, Fitzpatrick JAJ, Di Cera E. June 16, 2022. In: Blood. 139(24):3463-3473. doi: 10.1182/blood.2022015807.

Empirical transmit field bias correction of T1w/T2w myelin maps

Glasser MF, Coalson TS, Harms MP, Xu J, Baum GL, Autio JA, Auerbach EJ, Greve DN, Yacoub E, Van Essen DC, Bock NA, Hayashi T. Sep 2022. In: Neuroimage. 258:119360. doi: 10.1016/j.neuroimage.2022.119360. Epub 2022 Jun 10.

Human inference reflects a normative balance of complexity and accuracy

Tavoni G, Doi T , Pizzica C, Balasubramanian V, Gold JI. May 30, 2022. In: Nature Human Behavior. doi: 10.1038/s41562-022-01357-z.

Regulation of PDF receptor signaling controlling daily locomotor rhythms in Drosophila

Li W, Trigg JS, Taghert PH. May 23, 2022. In: PLoS Genetics. 18(5):e1010013. doi: 10.1371/journal.pgen.1010013. eCollection 2022 May.

FMRP regulates GABA_A receptor channel activity to control signal integration in hippocampal granule cells

Deng P-Y, Kumar A, Cavalli V, Klyachko VA. May 17, 2022. In: Cell Reports. 39(7):110820. doi: https://doi.org/10.1016/j.celrep.2022.110820.

Transcriptomic mapping uncovers Purkinje neuron plasticity driving learning

Chen X, Du Y, Joey Broussard GJ, Kislin M, Yuede CM, Zhang S, Dietmann S, Gabel H, Zhao G, Wang SS-H, Zhang X, Bonni A. May 11, 2022. In: Nature. doi: 10.1038/s41586-022-04711-3. Online ahead of print.

Fluoxetine exposure throughout neurodevelopment differentially influences basilar dendritic morphology in the motor and prefrontal cortices

Maloney SE, Tabachnick DR, Jakes C, Avdagic S, Bauernfeind AL, Dougherty JD. May 9, 2022. In: Sci Rep. 12(1):7605. doi: 10.1038/s41598-022-11614-w.

Circadian pacemaker neurons display cophasic rhythms in basal calcium level and in fast calcium fluctuations

Liang X, Holy TE, Taghert PH. April 26, 2022. In: PNAS. 119(17):e2109969119. doi: 10.1073/pnas.2109969119. Epub 2022 Apr 21.

Neuronal origins of reduced accuracy and biases in economic choices under sequential offers

Shi W, Ballesta S, Padoa-Schioppa C. April 13, 2022. In: eLife. 11:e75910. doi: 10.7554/eLife.75910. Online ahead of print.

Surprise and recency in novelty detection in the primate brain

Zhang K, Bromberg-Martin ES, Sogukpinar F, Kocher K, Monosov IE. April 11, 2022. In: Current Biology. S0960-9822(22)00504-8. doi: 10.1016/j.cub.2022.03.064. Online ahead of print.

Profiling the molecular signature of satellite glial cells at the single cell level reveals high similarities between rodents and humans

Avraham O, Chamessian A, Feng R, Yang L,  Halevi AE, Moore AM, Gereau 4th RW,  Cavalli V. March 31, 2022. In: Pain. doi: 10.1097/j.pain.0000000000002628. Online ahead of print.

Logistic analysis of choice data: A primer

Padoa-Schioppa C. March 17, 2022. In: Neuron. S0896-6273(22)00203-3. doi: 10.1016/j.neuron.2022.03.002. Online ahead of print.

Epithelial abnormalities in the small intestine of Zambian children with stunting

Mulenga C, Sviben S, Chandwe K, Amadi B, Kayamba V, Fitzpatrick JAJ, Mudenda V, Kelly P. March 16, 2022. In: Front Med (Lausanne). 9:849677. doi: 10.3389/fmed.2022.849677. eCollection 2022.

Relative brain volume of carnivorans has evolved in correlation with environmental and dietary variables differentially among clades

Lynch LM, Allen KL. 2022. In: Brain Behav Evol. 97(5):284-297. doi: 10.1159/000523787. Epub 2022 Mar 2.

Understanding nanomedicine treatment in an aggressive spontaneous brain cancer model at the stage of early blood brain barrier disruption

Janowicz PW, Houston ZH, Bunt J, Fletcher NL, Bell CA, Cowin G, Howard CB, Taslima D, Westra van Holthe N, Prior A, Soh V, Ghosh S, Humphries J, Huda P, Mahler SM, Richards LJ, Thurecht KJ. Feb 17, 2022. In: Biomaterials. 283:121416. doi: 10.1016/j.biomaterials.2022.121416. Online ahead of print.

A diffusion MRI-based spatiotemporal continuum of the embryonic mouse brain for probing gene-neuroanatomy connections

Wu D, Richards LJ, Zhao Z, Cao Z, Luo W, Shao W, Shi S-H, Miller MI, Mori S, Blackshaw S, Zhang J. Feb 15, 2022. In: PNAS. 119(7):e2111869119. doi: 10.1073/pnas.2111869119.

Apparent sunk cost effect in rational agents

Ott T, Masset P, Gouvêa TS, Kepecs A. Feb 11, 2022. In: Science Advances. 8(6). doi: 10.1126/sciadv.abi7004.

Spatiotemporal expression of regulatory kinases directs the transition from mitosis to cellular morphogenesis in Drosophila

Yang S, McAdow J, Du Y, Trigg J, Taghert PH, Johnson AN. Feb 9, 2022. In: Nat Commun. 13(1):772. doi: 10.1038/s41467-022-28322-8.

Connectivity and dynamics in the olfactory bulb

Kersen DEC, Tavoni G, Balasubramanian V. Feb 7, 2022. In: PLoS Comput Biol. 18(2):e1009856. doi: 10.1371/journal.pcbi.1009856. Online ahead of print.

Anatomical variability, multi-modal coordinate systems, and precision targeting in the marmoset brain

Ose T, Autio JA, Ohno M, Frey S, Uematsu A, Kawasaki A, Takeda C, Hori Y, Nishigori K, Nakako T, Yokoyama C, Nagata H, Yamamori T, Van Essen DC, Glasser MF, Watabe H, Hayashi T. Feb 2, 2022. In: Neuroimage. 118965. doi: 10.1016/j.neuroimage.2022.118965. Online ahead of print.

FK506-binding protein-like and FK506-binding protein 8 regulate dual leucine zipper kinase degradation and neuronal responses to axon injury

Lee B, Oh Y, Cho E, DiAntonio A, Cavalli V, Shin JE, Choi HW, Cho Y. Jan 28, 2022. In: J Biol Chem. 101647. doi: 10.1016/j.jbc.2022.101647. Online ahead of print.

Hierarchical and nonhierarchical features of the mouse visual cortical network

D’Souza RD, Wang Q, Ji W, Meier AM, Kennedy H, Knoblauch K, Burkhalter A. Jan 26, 2022. In: Nature Communications, 13:503.

Is neuroscience FAIR? A call for collaborative standardisation of neuroscience data

Poline J-B, Kennedy DN, Sommer FT, Ascoli GA, Van Essen DC, Ferguson AR, Grethe JS, Hawrylycz MJ, Thompson PM, Poldrack RA, Ghosh SS, Keator DB, Athey TL, Vogelstein JT, Mayberg HS, Martone ME. Jan 21, 2022. In: Neuroinformatics, doi: 10.1007/s12021-021-09557-0. Online ahead of print.

A spatially embedded cortical connectome reveals complex transformations

Hayashi T, Kennedy H, Van Essen DC. Jan 19, 2022. In: Neuron, 110(2):185-187. doi: 10.1016/j.neuron.2021.12.024.

Lysoptosis is an evolutionarily conserved cell death pathway moderated by intracellular serpins

Luke CJ, Markovina S, Good M, Wight IE, Thomas BJ, Linneman JM, Lanik WE, Koroleva O, Coffman MR, Miedel MT, Gong Q, Andress A, Campos Guerrero M, Wang S, LiYun Chen L, Beatty WL, Hausmann KN, White FV, Fitzpatrick JAJ, Orvedahl A, Pak SC, Silverman GA. Jan 12, 2022. In: Commun Biol, 5(1):47. doi: 10.1038/s42003-021-02953-x.

Hydraulic permeability and compressive properties of porcine and human synovium

Rohanifar M, Johnston BB, Davis AL, Guang Y, Nommensen K, Fitzpatrick JAJ, Pham CN, Setton LA. Jan 12, 2022. In: Biophys J, S0006-3495(22)00037-6. doi: 10.1016/j.bpj.2022.01.008. Online ahead of print.

Divergent evolution of developmental timing in the neocortex revealed by marsupial and eutherian transcriptomes

Kozulin P, Suárez R, Zhao Q-Y, Paolino A, Richards LJ, Fenlon LR. Jan 10, 2022. In: Development, dev.200212. doi: 10.1242/dev.200212. Online ahead of print.

Contralateral limb specificity for movement preparation in the parietal reach region

Mooshagian E, Yttri EA, Loewy AD, Snyder LH. Jan 7, 2022. In: J Neurosci, JN-RM-0232-21. doi: 10.1523/JNEUROSCI.0232-21.2021. Online ahead of print.

Disrupted association of sensory neurons with enveloping satellite glial cells in Fragile X mouse model

Avraham O, Deng P-Y, Maschi M, Klyachko VA, Cavalli V. Jan 4, 2022. In: Front Mol Neurosci, 14:796070. doi: 10.3389/fnmol.2021.796070. eCollection 2021.

A 2020 view of tension-based cortical morphogenesis

Van Essen, D. C., Dec 29 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 52, p. 32868-32879 12 p.

Assaying three-dimensional cellular architecture using x-ray tomographic and correlated imaging approaches

Bayguinov PO, Fisher MR, Fitzpatrick JAJ. November 13, 2020.  In: Journal of Biological Chemistry, 13(295):15782-15793.

How outcome uncertainty mediates attention, learning, and decision-making

Monosov, I. E. 2020, In: Trends in Neuroscience, 43, 795-809. doi: 10.1016/j.tins.2020.06.009. Epub 2020 Jul 28.

A Modular Setup to Run a Large Line of Behavioral Testing in Mice in a Single Space

Manno, R., Witte, J. & Papouin, T., Sep 1 2020, In: Current Protocols in Neuroscience. 93, 1, e102.

Accelerating the Evolution of Nonhuman Primate Neuroimaging

The PRIMatE Data Exchange (PRIME-DE) Global Collaboration Workshop and Consortium, Feb 19 2020, In: Neuron. 105, 4, p. 600-603 4 p.

A Dedicated Evolutionarily Conserved Molecular Network Licenses Differentiated Cells to Return to the Cell Cycle

Miao, Z. F., Lewis, M. A., Cho, C. J., Adkins-Threats, M., Park, D., Brown, J. W., Sun, J. X., Burclaff, J. R., Kennedy, S., Lu, J., Mahar, M., Vietor, I., Huber, L. A., Davidson, N. O., Cavalli, V., Rubin, D. C., Wang, Z. N. & Mills, J. C., Oct 26 2020, In: Developmental cell. 55, 2, p. 178-194.e7

A Domain-General Cognitive Core Defined in Multimodally Parcellated Human Cortex

Assem, M., Glasser, M. F., Van Essen, D. C. & Duncan, J., Jun 30 2020, In: Cerebral Cortex. 30, 8, p. 4361-4380 20 p.

An Open Resource for Non-human Primate Optogenetics

Tremblay, S., Acker, L., Afraz, A., Albaugh, D. L., Amita, H., Andrei, A. R., Angelucci, A., Aschner, A., Balan, P. F., Basso, M. A., Benvenuti, G., Bohlen, M. O., Caiola, M. J., Calcedo, R., Cavanaugh, J., Chen, Y., Chen, S., Chernov, M. M., Clark, A. M., Dai, J. & 78 others, , Dec 23 2020, In: Neuron. 108, 6, p. 1075-1090.e6

Anterior Cingulate Cortex and the Control of Dynamic Behavior in Primates

Monosov, I. E., Haber, S. N., Leuthardt, E. C. & Jezzini, A., Dec 7 2020, In: Current Biology. 30, 23, p. R1442-R1454

Assaying three-dimensional cellular architecture using X-ray tomographic and correlated imaging approaches

Bayguinov, P. O., Fisher, M. R. & Fitzpatrick, J. A. J., Nov 13 2020, In: Journal of Biological Chemistry. 295, 46, p. 15782-15793 12 p.

Astrocyte deletion of α2-Na/K ATPase triggers episodic motor paralysis in mice via a metabolic pathway

Smith, S. E., Chen, X., Brier, L. M., Bumstead, J. R., Rensing, N. R., Ringel, A. E., Shin, H., Oldenborg, A., Crowley, J. R., Bice, A. R., Dikranian, K., Ippolito, J. E., Haigis, M. C., Papouin, T., Zhao, G., Wong, M., Culver, J. P. & Bonni, A., Dec 2020, In: Nature communications. 11, 1, 6164.

Cellular diversity of the regenerating caudal fin

Hou, Y., Lee, H. J., Chen, Y., Ge, J., Osman, F. O. I., McAdow, A. R., Mokalled, M. H., Johnson, S. L., Zhao, G. & Wang, T., Aug 2020, In: Science Advances. 6, 33, eaba2084.

Central Vestibular Tuning Arises from Patterned Convergence of Otolith Afferents

Liu, Z., Kimura, Y., Higashijima, S. I., Hildebrand, D. G. C., Morgan, J. L. & Bagnall, M. W., Nov 25 2020, In: Neuron. 108, 4, p. 748-762.e4

Chemical effects of diceCT staining protocols on fluid-preserved avian specimens

Early, C. M., Morhardt, A. C., Cleland, T. P., Milensky, C. M., Kavich, G. M. & James, H. F., Sep 2020, In: PloS one. 15, 9 September, e0238783.

Coupling of Ca²⁺and voltage activation in BK channels through the aB helix/voltage sensor interface

Geng, Y., Deng, Z., Zhang, G., Budelli, G., Butler, A., Yuan, P., Cui, J., Salkoff, L. & Magleby, K. L., Jun 23 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14512-14521 10 p.

Cryo-EM structure of a neuronal functional amyloid implicated in memory persistence in Drosophila

Hervas, R., Rau, M. J., Park, Y., Zhang, W., Murzin, A. G., Fitzpatrick, J. A. J., Scheres, S. H. W. & Si, K., Mar 13 2020, In: Science. 367, 6483, p. 1230-1234 5 p.

Cryo-EM structures of the ATP release channel pannexin 1

Deng, Z., He, Z., Maksaev, G., Bitter, R. M., Rau, M., Fitzpatrick, J. A. J. & Yuan, P., Apr 1 2020, In: Nature Structural and Molecular Biology. 27, 4, p. 373-381 9 p.

Disrupting flight increases sleep and identifies a novel sleep-promoting pathway in Drosophila

Melnattur, K., Zhang, B. & Shaw, P. J., May 2020, In: Science Advances. 6, 19, eaaz2166.

DNMT3A Haploinsufficiency Results in Behavioral Deficits and Global Epigenomic Dysregulation Shared across Neurodevelopmental Disorders

Christian, D. L., Wu, D. Y., Martin, J. R., Moore, J. R., Liu, Y. R., Clemens, A. W., Nettles, S. A., Kirkland, N. M., Papouin, T., Hill, C. A., Wozniak, D. F., Dougherty, J. D. & Gabel, H. W., Nov 24 2020, In: Cell Reports. 33, 8, 108416.

Efficient transgenesis in caenorhabditis elegans using flp recombinase-mediated cassette exchange

Nonet, M. L., Aug 2020, In: Genetics. 215, 4, p. 903-921 19 p.

Emerging Insights into the Distinctive Neuronal Methylome

Clemens, A. W. & Gabel, H. W., Nov 2020, In: Trends in Genetics. 36, 11, p. 816-832 17 p.

Erratum: Local Perturbations of Cortical Excitability Propagate Differentially Through Large-Scale Functional Networks (Cerebral Cortex (2020) DOI: 10.1093/cercor/bhz314)

Rosenthal, Z. P., Raut, R. V., Yan, P., Koko, D., Kraft, A. W., Czerniewski, L., Acland, B., Mitra, A., Snyder, L. H., Bauer, A. Q., Snyder, A. Z., Culver, J. P., Raichle, M. E. & Lee, J. M., May 14 2020, In: Cerebral Cortex. 30, 5, p. 3431 1 p.

Erratum: International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts (Neuron (2020) 105(2) (212–216), (S0896627320300027), (10.1016/j.neuron.2020.01.002))

Adams, A., Albin, S., Amunts, K., Asakawa, T., Bernard, A., Bjaalie, J. G., Chakli, K., Deshler, J. O., De Koninck, Y., Ebell, C. J., Egan, G., Hale, M. E., Häusser, M., Jeong, S. J., Illes, J., Lanyon, L., Li, P., Li, Y., Magistretti, P., McMahon, A. & 21 others, , Mar 4 2020, In: Neuron. 105, 5, p. 947 1 p.

Erratum: A Neuroethics Framework for the Australian Brain Initiative (Neuron (2019) 101(3) (365–369), (S0896627319300054), (10.1016/j.neuron.2019.01.004))

Australian Brain Alliance, Jan 8 2020, In: Neuron. 105, 1, p. 201 1 p.

Functions of Gtf2i and Gtf2ird1 in the developing brain: Transcription, DNA binding and long-term behavioral consequences

Kopp, N. D., Nygaard, K. R., Liu, Y., McCullough, K. B., Maloney, S. E., Gabel, H. W. & Dougherty, J. D., Jun 3 2020, In: Human molecular genetics. 29, 9, p. 1498-1519 22 p.

Gating of human TRPV3 in a lipid bilayer

Deng, Z., Maksaev, G., Rau, M., Xie, Z., Hu, H., Fitzpatrick, J. A. J. & Yuan, P., Jul 1 2020, In: Nature Structural and Molecular Biology. 27, 7, p. 635-644 10 p.

How Outcome Uncertainty Mediates Attention, Learning, and Decision-Making

Monosov, I. E., Oct 2020, In: Trends in Neurosciences. 43, 10, p. 795-809 15 p.

How Support of Early Career Researchers Can Reset Science in the Post-COVID19 World

Gibson, E. M., Bennett, F. C., Gillespie, S. M., Güler, A. D., Gutmann, D. H., Halpern, C. H., Kucenas, S. C., Kushida, C. A., Lemieux, M., Liddelow, S., Macauley, S. L., Li, Q., Quinn, M. A., Roberts, L. W., Saligrama, N., Taylor, K. R., Venkatesh, H. S., Yalçın, B. & Zuchero, J. B., Jun 25 2020, In: Cell. 181, 7, p. 1445-1449 5 p.

International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts

International Brain Initiative, Jan 22 2020, In: Neuron. 105, 2, p. 212-216 5 p.

Local Perturbations of Cortical Excitability Propagate Differentially Through Large-Scale Functional Networks

Rosenthal, Z. P., Raut, R. V., Yan, P., Koko, D., Kraft, A. W., Czerniewski, L., Acland, B., Mitra, A., Snyder, L. H., Bauer, A. Q., Snyder, A. Z., Culver, J. P., Raichle, M. E. & Lee, J. M., May 14 2020, In: Cerebral Cortex. 30, 5, p. 3352-3369 18 p.

MeCP2 Represses Enhancers through Chromosome Topology-Associated DNA Methylation

Clemens, A. W., Wu, D. Y., Moore, J. R., Christian, D. L., Zhao, G. & Gabel, H. W., Jan 16 2020, In: Molecular cell. 77, 2, p. 279-293.e8

Metabolic changes in human brain evolution

Bauernfeind, A. L. & Babbitt, C. C., Jul 1 2020, In: Evolutionary Anthropology. 29, 4, p. 201-211 11 p.

Neural circuitry of information seeking

Bromberg-Martin, E. S. & Monosov, I. E., Oct 2020, In: Current Opinion in Behavioral Sciences. 35, p. 62-70 9 p.

Neural mechanisms of economic choices in mice

Kuwabara, M., Kang, N., Holy, T. E. & Padoa-Schioppa, C., Feb 2020, In: eLife. 9, e49669.

Neuronal activity in the primate amygdala during economic choice

Jezzini, A. & Padoa-Schioppa, C., Feb 5 2020, In: Journal of Neuroscience. 40, 6, p. 1286-1301 16 p.

Overseeing Memory Circuits by NFIA: New Face In Astrocytes

Li, Q., Jun 17 2020, In: Neuron. 106, 6, p. 878-880 3 p.

Plasmodium falciparum translational machinery condones polyadenosine repeats

Djuranovic, S. P., Erath, J., Andrews, R. J., Bayguinov, P. O., Chung, J. J., Chalker, D. L., Fitzpatrick, J. A. J., Moss, W. N., Szczesny, P. & Djuranovic, S., May 2020, In: eLife. 9, e57799.

Reinforcement biases subsequent perceptual decisions when confidence is low: A widespread behavioral phenomenon

Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T. H., Carandini, M., Tonegawa, S., Uchida, N. & Kepecs, A., Apr 2020, In: eLife. 9, e49834.

Robust principal component analysis for accurate outlier sample detection in RNA-Seq data

Chen, X., Zhang, B., Wang, T., Wang, T., Bonni, A. & Zhao, G., Jun 29 2020, In: BMC bioinformatics. 21, 1, 269.

Satellite glial cells promote regenerative growth in sensory neurons

Avraham, O., Deng, P. Y., Jones, S., Kuruvilla, R., Semenkovich, C. F., Klyachko, V. A. & Cavalli, V., Dec 1 2020, In: Nature communications. 11, 1, 4891.

Sleep restores place learning to the adenylyl cyclase mutant rutabaga

Dissel, S., Morgan, E., Duong, V., Chan, D., van Swinderen, B., Shaw, P. & Zars, T., Jan 2 2020, In: Journal of Neurogenetics. 34, 1, p. 83-91 9 p.

Structural mechanism for gating of a eukaryotic mechanosensitive channel of small conductance

Deng, Z., Maksaev, G., Schlegel, A. M., Zhang, J., Rau, M., Fitzpatrick, J. A. J., Haswell, E. S. & Yuan, P., Dec 1 2020, In: Nature communications. 11, 1, 3690.

Tempo and Pattern of Avian Brain Size Evolution

Ksepka, D. T., Balanoff, A. M., Smith, N. A., Bever, G. S., Bhullar, B. A. S., Bourdon, E., Braun, E. L., Burleigh, J. G., Clarke, J. A., Colbert, M. W., Corfield, J. R., Degrange, F. J., De Pietri, V. L., Early, C. M., Field, D. J., Gignac, P. M., Gold, M. E. L., Kimball, R. T., Kawabe, S., Lefebvre, L. & 17 others, , Jun 8 2020, In: Current Biology. 30, 11, p. 2026-2036.e3

The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain

Goodman, J. V., Yamada, T., Yang, Y., Kong, L., Wu, D. Y., Zhao, G., Gabel, H. W. & Bonni, A., Dec 1 2020, In: Nature communications. 11, 1, 3419.

The Mind of a Mouse

Abbott, L. F., Bock, D. D., Callaway, E. M., Denk, W., Dulac, C., Fairhall, A. L., Fiete, I., Harris, K. M., Helmstaedter, M., Jain, V., Kasthuri, N., LeCun, Y., Lichtman, J. W., Littlewood, P. B., Luo, L., Maunsell, J. H. R., Reid, R. C., Rosen, B. R., Rubin, G. M., Sejnowski, T. J., Seung, H.S., Svoboda, K., Tank, D.W., Tsao, D., Van Essen, D.C., Sep 17 2020, In: Cell. 182, 6, p. 1372-13T76 5 p.

The neurons that mistook a hat for a face

Arcaro, M. J., Ponce, C. & Livingstone, M., Jun 2020, In: eLife. 9, p. 1-19 19 p., e53798

The pheromone darcin drives a circuit for innate and reinforced behaviours

Demir, E., Li, K., Bobrowski-Khoury, N., Sanders, J. I., Beynon, R. J., Hurst, J. L., Kepecs, A. & Axel, R., Feb 6 2020, In: Nature. 578, 7793, p. 137-141 5 p.

The role of glia in protein aggregation

Li, Q. & Haney, M. S., Sep 2020, In: Neurobiology of Disease. 143, 105015.

The sleep nullifying apparatus: A highly efficient method of sleep depriving drosophila

Melnattur, K., Morgan, E., Duong, V., Kalra, A. & Shaw, P. J., Dec 2020, In: Journal of Visualized Experiments. 2020, 166, e62105.

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing

Autio, J. A., Glasser, M. F., Ose, T., Donahue, C. J., Bastiani, M., Ohno, M., Kawabata, Y., Urushibata, Y., Murata, K., Nishigori, K., Yamaguchi, M., Hori, Y., Yoshida, A., Go, Y., Coalson, T. S., Jbabdi, S., Sotiropoulos, S. N., Kennedy, H., Smith, S., Van Essen, D. C., Hayashi, T., Jul 15 2020, In: NeuroImage. 215, 116800.

Values encoded in orbitofrontal cortex are causally related to economic choices

Ballesta, S., Shi, W., Conen, K. E. & Padoa-Schioppa, C., Dec 17 2020, In: Nature. 588, 7838, p. 450-453 4 p.

Variation in the strength of allometry drives rates of evolution in primate brain shape

Sansalone, G., Allen, K., Ledogar, J. A., Ledogar, S., Mitchell, D. R., Profico, A., Castiglione, S., Melchionna, M., Serio, C., Mondanaro, A., Raia, P. & Wroe, S., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1930, 20200807.

Zika virus infection in the developing mouse produces dramatically different neuropathology dependent on viral strain

Noguchi, K. K., Swiney, B. S., Williams, S. L., Huffman, J. N., Lucas, K., Wang, S. H., Kapral, K. M., Li, A. & Dikranian, K. T., Jan 29 2020, In: Journal of Neuroscience. 40, 5, p. 1145-1161 17 p.

Realizing the Clinical Potential of Computational Psychiatry: Report From the Banbury Center Meeting, February 2019

Browning, M., Carter, C. S., Chatham, C., Den Ouden, H., Gillan, C. M., Baker, J. T., Chekroud, A. M., Cools, R., Dayan, P., Gold, J., Goldstein, R. Z., Hartley, C. A., Kepecs, A., Lawson, R. P., Mourao-Miranda, J., Phillips, M. L., Pizzagalli, D. A., Powers, A., Rindskopf, D., Roiser, J. P., Schmack, K., Schiller, D., Sebold, M., Stephan, K. E., Frank, M. J., Huys, Q. & Paulus, M., Jul 15 2020, In: Biological Psychiatry. 88, 2, p. e5-e10

Interneuron Types as Attractors and Controllers

Fishell, G. & Kepecs, A., Jul 8 2020, In: Annual Review of Neuroscience. 43, p. 1-30 30 p.

Robust principal component analysis for accurate outlier sample detection in RNA-Seq data

Chen, X., Zhang, B., Wang, T., Wang, T., Bonni, A. & Zhao, G., Jun 29 2020, In: BMC bioinformatics. 21, 1, 269.

Understanding the uptake of nanomedicines at different stages of brain cancer using a modular nanocarrier platform and precision bispecific antibodies

Houston ZH, Bunt J, Chen KS, Puttick S, Howard CB, Fletcher NL, Fuchs AV, Cui J, Ju Y, Cowin G, Song X, Boyd AW, Mahler SM, Richards LJ, Caruso F, Thurecht KJ, May 27, 2020. In: ACS Central Science. 6(5): 727-738.

Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Feb 1 2020, In: Nature Biomedical Engineering. 4, 2, p. 223-231 9 p.

Is glass ceiling present? Towards the equal opportunity of women in child neurology

Mochida, G. H., Hagerman, R. J., Richards, L. & Chang, Y. C., 2020, In: No To Hattatsu. 52, 2, p. 97-108 12 p.

Transcription factors NFIA and NFIB induce cellular differentiation in high-grade astrocytoma

Chen, K. S., Bridges, C. R., Lynton, Z., Lim, J. W. C., Stringer, B. W., Rajagopal, R., Wong, K. T., Ganesan, D., Ariffin, H., Day, B. W., Richards, L. J. & Bunt, J., Jan 1 2020, In: Journal of Neuro-Oncology. 146, 1, p. 41-53 13 p.

Combined experimental approach and finite element modeling of small molecule transport through joint synovium to measure effective diffusivity

Guang Y, McGrath TM, Klug NR, Nims RJ, Shih CC, Bayguinov PO, Guilak F, Pham CTN, Fitzpatrick JAJ, Setton LA. April 1, 2020. In: Journal of Biomechanical Engineering, 142:0410101-8.

A neural network for information seeking

White, J. K., Bromberg-Martin, E. S., Heilbronner, S. R., Zhang, K., Pai, J., Haber, S. N. & Monosov, I. E., Dec 1 2019, In: Nature communications. 10, 1, 5168.

Categorical encoding of decision variables in orbitofrontal cortex

Onken, A., Xie, J., Panzeri, S. & Padoa-Schioppa, C., 2019, In: PLoS computational biology. 15, 10, e1006667.

Novelty, Salience, and Surprise Timing Are Signaled by Neurons in the Basal Forebrain

Zhang, K., Chen, C. D., Monosov, I. E. 2019, In: Current Biology, .29,134-142.e3. doi: 10.1016/j.cub.2018.11.012. Epub 2018 Dec 20.*

Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons

Lewis, E. M. A., Meganathan, K., Baldridge, D., Gontarz, P., Zhang, B., Bonni, A., Constantino, J. N. & Kroll, K. L., Dec 30 2019, In: Molecular Autism. 10, 1, 51.

Cerebral cortical folding, parcellation, and connectivity in humans, nonhuman primates, and mice

Van Essen, D. C., Donahue, C. J., Coalson, T. S., Kennedy, H., Hayashi, T. & Glasser, M. F., Dec 26 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 52, p. 26173-26180 8 p.

Characterization of the bone marrow adipocyte niche with three-dimensional electron microscopy

Robles, H., Park, S. J., Joens, M. S., Fitzpatrick, J. A. J., Craft, C. S. & Scheller, E. L., Jan 2019, In: Bone. 118, p. 89-98 10 p.

Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors

Majidi, S. P., Reddy, N. C., Moore, M. J., Chen, H., Yamada, T., Andzelm, M. M., Cherry, T. J., Hu, L. S., Greenberg, M. E. & Bonni, A., Nov 12 2019, In: Cell Reports. 29, 7, p. 2001-2015.e5

Ciftify: A framework for surface-based analysis of legacy MR acquisitions

Dickie, E. W., Anticevic, A., Smith, D. E., Coalson, T. S., Manogaran, M., Calarco, N., Viviano, J. D., Glasser, M. F., Van Essen, D. C. & Voineskos, A. N., Aug 15 2019, In: NeuroImage. 197, p. 818-826 9 p.

Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power

Glasser, M. F., Coalson, T. S., Bijsterbosch, J. D., Harrison, S. J., Harms, M. P., Anticevic, A., Van Essen, D. C. & Smith, S. M., Aug 15 2019, In: NeuroImage. 197, p. 435-438 4 p.

Conditional knockout of UBC13 produces disturbances in gait and spontaneous locomotion and exploration in mice

Wozniak, D. F., Valnegri, P., Dearborn, J. T., Fowler, S. C. & Bonni, A., Dec 1 2019, In: Scientific reports. 9, 1, 4379.

Diffusion Tensor Model links to Neurite Orientation Dispersion and Density Imaging at high b-value in Cerebral Cortical Gray Matter

Fukutomi, H., Glasser, M. F., Murata, K., Akasaka, T., Fujimoto, K., Yamamoto, T., Autio, J. A., Okada, T., Togashi, K., Zhang, H., Van Essen, D. C. & Hayashi, T., Dec 1 2019, In: Scientific reports. 9, 1, 12246.

Economic Decisions through Circuit Inhibition

Ballesta, S. & Padoa-Schioppa, C., Nov 18 2019, In: Current Biology. 29, 22, p. 3814-3824.e5

Evolving Images for Visual Neurons Using a Deep Generative Network Reveals Coding Principles and Neuronal Preferences

Ponce, C. R., Xiao, W., Schade, P. F., Hartmann, T. S., Kreiman, G. & Livingstone, M. S., May 2 2019, In: Cell. 177, 4, p. 999-1009.e10

Exercise-induced loading increases ilium cortical area in a selectively bred mouse model

Lewton, K. L., Ritzman, T., Copes, L. E., Garland, T. & Capellini, T. D., Mar 2019, In: American Journal of Physical Anthropology. 168, 3, p. 543-551 9 p.

Eye-hand re-coordination: A pilot investigation of gaze and reach biofeedback in chronic stroke

Rizzo, J. R., Beheshti, M., Shafieesabet, A., Fung, J., Hosseini, M., Rucker, J. C., Snyder, L. H. & Hudson, T. E., 2019, Progress in Brain Research. Ramat, S. & Shaikh, A. G. (eds.). Elsevier B.V., p. 361-374 14 p. (Progress in Brain Research; vol. 249).

Fast objective coupled planar illumination microscopy

Greer, C. J. & Holy, T. E., Dec 1 2019, In: Nature communications. 10, 1, 4483.

Genetic diversity underlying behavioral plasticity in human adaptation

Bauernfeind, A. L. & Babbitt, C. C., 2019, Progress in Brain Research. Hofman, M. A. (ed.). Elsevier B.V., p. 41-58 18 p. (Progress in Brain Research; vol. 250).

Genomic kinship construction to enhance genetic analyses in the human connectome project data

Kochunov, P., Donohue, B., Mitchell, B. D., Ganjgahi, H., Adhikari, B., Ryan, M., Medland, S. E., Jahanshad, N., Thompson, P. M., Blangero, J., Fieremans, E., Novikov, D. S., Marcus, D., Van Essen, D. C., Glahn, D. C., Elliot Hong, L. & Nichols, T. E., Apr 1 2019, In: Human Brain Mapping. 40, 5, p. 1677-1688 12 p.

HDAC5 promotes optic nerve regeneration by activating the mTOR pathway

Pita-Thomas, W., Mahar, M., Joshi, A., Gan, D. & Cavalli, V., Jul 2019, In: Experimental Neurology. 317, p. 271-283 13 p.

Hierarchical Heterogeneity across Human Cortex Shapes Large-Scale Neural Dynamics

Demirtaş, M., Burt, J. B., Helmer, M., Ji, J. L., Adkinson, B. D., Glasser, M. F., Van Essen, D. C., Sotiropoulos, S. N., Anticevic, A. & Murray, J. D., Mar 20 2019, In: Neuron. 101, 6, p. 1181-1194.e13

Hybridization in human evolution: Insights from other organisms

Ackermann, R. R., Arnold, M. L., Baiz, M. D., Cahill, J. A., Cortés-Ortiz, L., Evans, B. J., Grant, B. R., Grant, P. R., Hallgrimsson, B., Humphreys, R. A., Jolly, C. J., Malukiewicz, J., Percival, C. J., Ritzman, T. B., Roos, C., Roseman, C. C., Schroeder, L., Smith, F. H., Warren, K. A., Wayne, R. K., Zinner, D., Jul 2019, In: Evolutionary Anthropology. 28, 4, p. 189-209 21 p.

Location and Cell-Type-Specific Bias of Metabotropic Glutamate Receptor, mGlu₅, Negative Allosteric Modulators

Jong, Y. J. I., Harmon, S. K. & O’Malley, K. L., Nov 20 2019, In: ACS Chemical Neuroscience. 10, 11, p. 4558-4570 13 p.

Mechanism of microtubule plus-end tracking by the plant-specific SPR1 protein and its development as a versatile plus-end marker

Balkunde, R., Foroughi, L., Ewan, E., Emenecker, R., Cavalli, V. & Dixit, R., Nov 1 2019, In: Journal of Biological Chemistry. 294, 44, p. 16374-16384 11 p.

ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine

Schlosberg, C. E., Wu, D. Y., Gabel, H. W. & Edwards, J. R., Mar 18 2019, In: Nucleic acids research. 47, 5, e28.

Monitoring behaviorally induced biochemical changes using fluorescence lifetime photometry

Lee, S. J., Chen, Y., Lodder, B. & Sabatini, B. L., 2019, In: Frontiers in Genetics. 10, JUL, 766.

Morning and Evening Circadian Pacemakers Independently Drive Premotor Centers via a Specific Dopamine Relay

Liang, X., Ho, M. C. W., Zhang, Y., Li, Y., Wu, M. N., Holy, T. E. & Taghert, P. H., May 22 2019, In: Neuron. 102, 4, p. 843-857.e4

Neuronal evidence for good-based economic decisions under variable action costs

Cai, X. & Padoa-Schioppa, C., Dec 1 2019, In: Nature communications. 10, 1, 393

Nociceptor Deletion of Tsc2 Enhances Axon Regeneration by Inducing a Conditioning Injury Response in Dorsal Root Ganglia

Carlin, D., Halevi, A. E., Ewan, E. E., Moore, A. M. & Cavalli, V., May 1 2019, In: eNeuro. 6, 3

Partial adaptation to the value range in the macaque orbitofrontal cortex

Conen, K. E. & Padoa-Schioppa, C., May 1 2019, In: Journal of Neuroscience. 39, 18, p. 3498-3513 16 p.

Publisher Correction: Sensory experience remodels genome architecture in neural circuit to drive motor learning (Nature, (2019), 569, 7758, (708-713), 10.1038/s41586-019-1190-7)

Yamada, T., Yang, Y., Valnegri, P., Juric, I., Abnousi, A., Markwalter, K. H., Guthrie, A. N., Godec, A., Oldenborg, A., Hu, M., Holy, T. E. & Bonni, A., Jun 13 2019, In: Nature. 570, 7760, p. E33

Regulation of neuronal connectivity in the mammalian brain by chromatin remodeling

Goodman, J. V. & Bonni, A., Dec 2019, In: Current Opinion in Neurobiology. 59, p. 59-68 10 p.

Sensorimotor Coding of Vermal Granule Neurons in the Developing Mammalian Cerebellum

Markwalter, K. H., Yang, Y., Holy, T. E. & Bonni, A., Aug 21 2019, In: The Journal of neuroscience : the official journal of the Society for Neuroscience. 39, 34, p. 6626-6643 18 p.

Sensory coding mechanisms revealed by optical tagging of physiologically defined neuronal types

Lee, D., Kume, M. & Holy, T. E., Dec 13 2019, In: Science. 366, 6471, p. 1384-1389 6 p.

Sensory experience remodels genome architecture in neural circuit to drive motor learning

Yamada, T., Yang, Y., Valnegri, P., Juric, I., Abnousi, A., Markwalter, K. H., Guthrie, A. N., Godec, A., Oldenborg, A., Hu, M., Holy, T. E. & Bonni, A., May 30 2019, In: Nature. 569, 7758, p. 708-713 6 p.

Sodium-activated potassium channels moderate excitability in vascular smooth muscle

Li, P., Halabi, C. M., Stewart, R., Butler, A., Brown, B., Xia, X., Santi, C., England, S., Ferreira, J., Mecham, R. P. & Salkoff, L., Oct 1 2019, In: Journal of Physiology. 597, 20, p. 5093-5108 16 p.

Spatial Clustering of Inhibition in Mouse Primary Visual Cortex

D’Souza, R. D., Bista, P., Meier, A. M., Ji, W. & Burkhalter, A., Nov 6 2019, In: Neuron. 104, 3, p. 588-600.e5

Spinal V2b neurons reveal a role for ipsilateral inhibition in speed control

Callahan, R. A., Roberts, R., Sengupta, M., Kimura, Y., Higashijima, S. I. & Bagnall, M. W., Jul 2019, In: eLife. 8, e47837.

Staphylococcus aureus infects osteoclasts and replicates intracellularly

Krauss, J. L., Roper, P. M., Ballard, A., Shih, C. C., Fitzpatrick, J. A. J., Cassat, J. E., Pei Ying, N., Pavlos, N. J. & Veisa, D. J., 2019, In: mBio. 10, 5, e02447-19.

Staying awake to stay alive: A circuit controlling starvation-induced waking

Melnattur, K. & Shaw, P., Mar 2019, In: PLoS biology. 17, 3, e3000199.

Structured inhibitory activity dynamics in new virtual environments

Arriaga, M. & Han, E. B., Oct 2019, In: eLife. 8

Therapeutic efficacy of favipiravir against bourbon virus in mice

Bricker, T. L., Shafiuddin, M., Gounder, A. P., Janowski, A. B., Zhao, G., Williams, G. D., Jagger, B. W., Diamondid, M. S., Bailey, T., Kwon, J. H., Wangid, D. & Boon, A. C. M., Jun 2019, In: PLoS pathogens. 15, 6, e1007790.

Tmem178 negatively regulates store-operated calcium entry in myeloid cells via association with STIM1

Yang, Z., Yan, H., Dai, W., Jing, J., Yang, Y., Mahajan, S., Zhou, Y., Li, W., Macaubas, C., Mellins, E. D., Shih, C. C., Fitzpatrick, J. A. J. & Faccio, R., Jul 2019, In: Journal of Autoimmunity. 101, p. 94-108 15 p.

U–Pb-dated flowstones restrict South African early hominin record to dry climate phases

Pickering, R., Herries, A. I. R., Woodhead, J. D., Hellstrom, J. C., Green, H. E., Paul, B., Ritzman, T., Strait, D. S., Schoville, B. J. & Hancox, P. J., Jan 10 2019, In: Nature. 565, 7738, p. 226-229 4 p.

Using animal models to evaluate the functional consequences of anesthesia during early neurodevelopment

Maloney, S. E., Creeley, C. E., Hartman, R. E., Yuede, C. M., Zorumski, C. F., Jevtovic-Todorovic, V., Dikranian, K., Noguchi, K. K., Farber, N. B. & Wozniak, D. F., Nov 2019, In: Neurobiology of Learning and Memory. 165, 106834.

Vertical transmission in Caenorhabditis nematodes of RNA molecules encoding a viral RNA-dependent RNA polymerase

Richaud, A., Frézal, L., Tahan, S., Jiang, H., Blatter, J. A., Zhao, G., Kaur, T., Wang, D. & Félix, M. A., Dec 3 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 49, p. 24738-24747 10 p.

Vesicular glutamatergic transmission in noise-induced loss and repair of cochlear ribbon synapses

Kim, K. X., Payne, S., Yang-Hood, A., Li, S. Z., Davis, B., Carlquist, J., Ghaffari, B. V., Gantz, J. A., Kallogjeri, D., Fitzpatrick, J. A. J., Ohlemiller, K. K., Hirose, K. & Rutherford, M. A., Jun 5 2019, In: Journal of Neuroscience. 39, 23, p. 4434-4447 14 p.

Viral complementation of immunodeficiency confers protection against enteric pathogens via interferon-λ

Ingle, H., Lee, S., Ai, T., Orvedahl, A., Rodgers, R., Zhao, G., Sullender, M., Peterson, S. T., Locke, M., Liu, T. C., Yokoyama, C. C., Sharp, B., Schultz-Cherry, S., Miner, J. J. & Baldridge, M. T., Jul 1 2019, In: Nature microbiology. 4, 7, p. 1120-1128 9 p.

Isolation of region-specific microglia from one adult mouse brain hemisphere for deep single-cell rna sequencing

Zhou, L. & Li, Q., Dec 2019, In: Journal of Visualized Experiments. 2019, 154, e60347.

Variants in nuclear factor I genes influence growth and development

Zenker, M., Bunt, J., Schanze, I., Schanze, D., Piper, M., Priolo, M., Gerkes, E.H., Gronostajski, R.M., Richards, L.J., Vogt, J., Wessels, M.W., Hennekam, R.C., Dec 1 2019, In: American Journal of Medical Genetics, Part C: Seminars in Medical Genetics, 181 (4), pp. 611-626.

Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea

Zhao, G., Droit, L., Gilbert, M. H., Schiro, F. R., Didier, P. J., Si, X., Paredes, A., Handley, S. A., Virgin, H. W., Bohm, R. P. & Wang, D., Jan 15 2019, In: Virology. 527, p. 77-88 12 p.

Increased cognitive complexity reveals abnormal brain network activity in individuals with corpus callosum dysgenesis

Hearne, L. J., Dean, R. J., Robinson, G. A., Richards, L. J., Mattingley, J. B. & Cocchi, L., 2019, In: NeuroImage: Clinical. 21, 101595.

Development and evolution of cerebral and cerebellar cortex

Van Essen, D. C., Donahue, C. J. & Glasser, M. F., Aug 1 2018, In: Brain, Behavior and Evolution. 91, 3, p. 158-169 12 p.

Development of vestibular behaviors in zebrafish

Bagnall, M. W. & Schoppik, D., Dec 2018, In: Current Opinion in Neurobiology. 53, p. 83-89 7 p.

Acute control of the sleep switch in drosophila reveals a role for gap junctions in regulating behavioral responsiveness

Troup, M., Yap, M. H. W., Rohrscheib, C., Grabowska, M. J., Ertekin, D., Randeniya, R., Kottler, B., Larkin, O., Munro, K., Shaw, P. J. & van Swinderen, B., Aug 15 2018, In: eLife. 7, e37105.

A gyral coordinate system predictive of fibre orientations

Cottaar, M., Bastiani, M., Chen, C., Dikranian, K., Van Essen, D., Behrens, T. E., Sotiropoulos, S. N. & Jbabdi, S., Aug 1 2018, In: NeuroImage. 176, p. 417-430 14 p.

Cargo crowding at actin-rich regions along axons causes local traffic jams

Sood, P., Murthy, K., Kumar, V., Nonet, M. L., Menon, G. I. & Koushika, S. P., Mar 2018, In: Traffic. 19, 3, p. 166-181 16 p.

Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome

Cheng, C., Deng, P. Y., Ikeuchi, Y., Yuede, C., Li, D., Rensing, N., Huang, J., Baldridge, D., Maloney, S. E., Dougherty, J. D., Constantino, J., Jahani-Asl, A., Wong, M., Wozniak, D. F., Wang, T., Klyachko, V. A. & Bonni, A., Nov 6 2018, In: Cell Reports. 25, 6, p. 1404-1414.e6

Compound C inhibits nonsense-mediated RNA decay independently of AMPK

Cheruiyot, A., Li, S., Nickless, A., Roth, R., Fitzpatrick, J. A. J. & You, Z., Oct 2018, In: PloS one. 13, 10, e0204978.

Craniomandibular form and body size variation of first generation mouse hybrids: A model for hominin hybridization

Warren, K. A., Ritzman, T. B., Humphreys, R. A., Percival, C. J., Hallgrímsson, B. & Ackermann, R. R., Mar 2018, In: Journal of Human Evolution. 116, p. 57-74 18 p.

Deletion of tsc2 in nociceptors reduces target innervation, ion channel expression, and sensitivity to heat

Carlin, D., Golden, J. P., Mogha, A., Samineni, V. K., Monk, K. R., Gereau, R. W. & Cavalli, V., Mar 1 2018, In: eNeuro. 5, 2, e0436-17.2018.

Dissociation of LFP power and tuning in the frontal cortex during memory

Holmes, C. D., Papadimitriou, C. & Snyder, L. H., Sep 19 2018, In: Journal of Neuroscience. 38, 38, p. 8177-8186 10 p.

Dynamic patterns of cortical expansion during folding of the preterm human brain

Garcia, K. E., Robinson, E. C., Alexopoulos, D., Dierker, D. L., Glasser, M. F., Coalson, T. S., Ortinau, C. M., Rueckert, D., Taber, L. A., Van Essen, D. C., Rogers, C. E., Smysere, C. D. & Bayly, P. V., Mar 20 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 12, p. 3156-3161 6 p.

Epigenetic regulator UHRF1 inactivates REST and growth suppressor gene expression via DNA methylation to promote axon regeneration

Oh, Y. M., Mahar, M., Ewan, E. E., Leahy, K. M., Zhao, G. & Cavalli, V., Dec 26 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 52, p. E12417-E12426

Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects

Harms, M. P., Somerville, L. H., Ances, B. M., Andersson, J., Barch, D. M., Bastiani, M., Bookheimer, S. Y., Brown, T. B., Buckner, R. L., Burgess, G. C., Coalson, T. S., Chappell, M. A., Dapretto, M., Douaud, G., Fischl, B., Glasser, M. F., Greve, D. N., Hodge, C., Jamison, K. W., Jbabdi, S. & 21 others, , Dec 2018, In: NeuroImage. 183, p. 972-984 13 p.

From fossils to function: Integrative and taxonomically inclusive approaches to vertebrate evolutionary neuroscience

Morhardt, A. C., Aug 1 2018, In: Brain, Behavior and Evolution. 91, 3, p. 123-124 2 p.

GPCR signalling from within the cell

Jong, Y. J. I., Harmon, S. K. & O’Malley, K. L., Nov 2018, In: British Journal of Pharmacology. 175, 21, p. 4026-4035 10 p.

Intracellular GPCRs Play Key Roles in Synaptic Plasticity

Jong, Y. J. I., Harmon, S. K. & O’Malley, K. L., Sep 19 2018, In: ACS Chemical Neuroscience. 9, 9, p. 2162-2172 11 p.

Intrinsic mechanisms of neuronal axon regeneration

Mahar, M. & Cavalli, V., Jun 1 2018, In: Nature Reviews Neuroscience. 19, 6, p. 323-337 15 p.

LONGO: An R package for interactive gene length dependent analysis for neuronal identity

McCoy, M. J., Paul, A. J., Victor, M. B., Richner, M., Gabel, H. W., Gong, H., Yoo, A. S. & Ahn, T. H., Jul 1 2018, In: Bioinformatics. 34, 13, p. i422-i428

LysMD3 is a type II membrane protein without an in vivo role in the response to a range of pathogens

Yokoyama, C. C., Baldridge, M., Leung, D., Zhao, G., Desai, C., Liu, T-C., Diaz-Ochoa, V. E., Huynh, J. P., Kimmey, J. M., Sennott, E. L., Hole, C. R., Idol, R. A., Park, S., Storek, K. M., Wang, C., Hwang, S., Milam, A. V., Chen, E., Kerrinnes, T., Starnbach, M. N. & 12 others, , Apr 20 2018, In: Journal of Biological Chemistry. 293, 16, p. 6022-6038 17 p.

Mandibular ramus shape variation and ontogeny in Homo sapiens and Homo neanderthalensis

Terhune, C. E., Ritzman, T. B. & Robinson, C. A., Aug 2018, In: Journal of Human Evolution. 121, p. 55-71 17 p.

Mining the Virome for Insights into Type 1 Diabetes

Park, A. & Zhao, G., May 1 2018, In: DNA and cell biology. 37, 5, p. 422-425 4 p.

Modern Laser Scanning Confocal Microscopy

Bayguinov, P. O., Oakley, D. M., Shih, C. C., Geanon, D. J., Joens, M. S. & Fitzpatrick, J. A. J., Jul 2018, In: Current Protocols in Cytometry. 85, 1, e39.

Multimodal surface matching with higher-order smoothness constraints

Robinson, E. C., Garcia, K., Glasser, M. F., Chen, Z., Coalson, T. S., Makropoulos, A., Bozek, J., Wright, R., Schuh, A., Webster, M., Hutter, J., Price, A., Cordero Grande, L., Hughes, E., Tusor, N., Bayly, P. V., Van Essen, D. C., Smith, S. M., Edwards, A. D., Hajnal, J., Jenkinson, M., Glocker, B., Rueckert, D., Feb 15 2018, In: NeuroImage. 167, p. 453-465 13 p.

Neurite imaging reveals microstructural variations in human cerebral cortical gray matter

Fukutomi, H., Glasser, M. F., Zhang, H., Autio, J. A., Coalson, T. S., Okada, T., Togashi, K., Van Essen, D. C. & Hayashi, T., Nov 15 2018, In: NeuroImage. 182, p. 488-499 12 p.

Non-cell Autonomous Degeneration: Role of Astrocytes in Neurodegenerative Diseases. Role of Astrocytes in Neurodegenerative Diseases.

Smith, S. E. & Bonni, A., Apr 4 2018, The Molecular and Cellular Basis of Neurodegenerative Diseases: Underlying Mechanisms.Elsevier Inc., p. 415-440 26 p.

Nonlinear optical imaging of extracellular matrix proteins

Shih, C. C., Oakley, D. M., Joens, M. S., Roth, R. A. & Fitzpatrick, J. A. J., 2018, Methods in Cell Biology.Academic Press Inc., p. 57-78 22 p. (Methods in Cell Biology; vol. 143).

Palladin is a neuron-specific translational target of mtor signaling that regulates axon morphogenesis

Umegaki, Y., Brotons, A. M., Nakanishi, Y., Luo, Z., Zhang, H., Bonni, A. & Ikeuchi, Y., May 23 2018, In: Journal of Neuroscience. 38, 21, p. 4985-4995 11 p.

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans

Van Essen, D. C. & Glasser, M. F., Aug 22 2018, In: Neuron. 99, 4, p. 640-663 24 p.

Place learning overrides innate behaviors in Drosophila

Baggett, V., Mishra, A., Kehrer, A. L., Robinson, A. O., Shaw, P. & Zars, T., Mar 2018, In: Learning and Memory. 25, 3, p. 122-128 7 p.

Quantitative assessment of prefrontal cortex in humans relative to nonhuman primates

Donahue, C. J., Glasser, M. F., Preuss, T. M., Rilling, J. K. & Van Essen, D. C., May 29 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 22, p. E5183-E5192

Rapid cloning of novel rhesus adenoviral vaccine vectors

Abbink, P., Kirilova, M., Boyd, M., Mercado, N., Li, Z., Nityanandam, R., Nanayakkara, O., Peterson, R., Larocca, R. A., Aid, M., Tartaglia, L., Mutetwa, T., Blass, E., Jetton, D., Maxfield, L. F., Borducchi, E. N., Badamchi-Zadeh, A., Handley, S., Zhao, G., Virgin, H. W., Havenga, M. J., Barouch, D.H., Mar 1 2018, In: Journal of virology. 92, 6, e01924-17.

Reciprocal spatiotemporally controlled apoptosis regulates Wolffian duct cloaca fusion

Hoshi, M., Reginensi, A., Joens, M. S., Fitzpatrick, J. A. J., McNeill, H. & Jain, S., Mar 2018, In: Journal of the American Society of Nephrology. 29, 3, p. 775-783 9 p.

Red blood cell phenotype fidelity following glycerol cryopreservation optimized for research purposes

Rogers, S. C., Dosier, L. B., McMahon, T. J., Zhu, H., Timm, D., Zhang, H., Herbert, J., Atallah, J., Palmer, G. M., Cook, A., Ernst, M., Prakash, J., Terng, M., Towfighi, P., Doctor, R., Said, A., Joens, M. S., Fitzpatrick, J. A. J., Hanna, G., Lin, X., Reisz, J. A., Nemkov, T., D’Alessandro, A., Doctor, A., Dec 2018, In: PloS one. 13, 12, e0209201.

Scaling of human brain size

Van Essen, D. C., Jun 15 2018, In: Science. 360, 6394, p. 1184-1185 2 p.

Scaling of Primate Forearm Muscle Architecture as It Relates to Locomotion and Posture

Leischner, C. L., Crouch, M., Allen, K. L., Marchi, D., Pastor, F. & Hartstone-Rose, A., Mar 2018, In: Anatomical Record. 301, 3, p. 484-495 12 p.

Single Units in the Posterior Parietal Cortex Encode Patterns of Bimanual Coordination

Mooshagian, E., Wang, C., Holmes, C. D. & Snyder, L. H., May 1 2018, In: Cerebral Cortex. 28, 5, p. 1549-1567 19 p.

Sleep regulates visual selective attention in Drosophila

Kirszenblat, L., Ertekin, D., Goodsell, J., Zhou, Y., Shaw, P. J. & van Swinderen, B., Dec 2018, In: Journal of Experimental Biology. 221, 24, jeb191429.

Spatial eye–hand coordination during bimanual reaching is not systematically coded in either LIP or PRR

Mooshagian, E. & Snyder, L. H., Apr 17 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 16, p. E3817-E3826

Spontaneous Infra-slow Brain Activity Has Unique Spatiotemporal Dynamics and Laminar Structure

Mitra, A., Kraft, A., Wright, P., Acland, B., Snyder, A. Z., Rosenthal, Z., Czerniewski, L., Bauer, A., Snyder, L., Culver, J., Lee, J. M. & Raichle, M. E., Apr 18 2018, In: Neuron. 98, 2, p. 297-305.e6

The accessory olfactory system: Innately specialized or microcosm of mammalian circuitry?

Holy, T. E., Jul 8 2018, In: Annual Review of Neuroscience. 41, p. 501-525 25 p.

The Basal Forebrain Regulates Global Resting-State fMRI Fluctuations

Turchi, J., Chang, C., Ye, F. Q., Russ, B. E., Yu, D. K., Cortes, C. R., Monosov, I. E., Duyn, J. H. & Leopold, D. A., Feb 21 2018, In: Neuron. 97, 4, p. 940-952.e4

The Human Connectome Project 7 Tesla retinotopy dataset: Description and population receptive field analysis

Benson, N. C., Jamison, K. W., Arcaro, M. J., Vu, A. T., Glasser, M. F., Coalson, T. S., Van Essen, D. C., Yacoub, E., Ugurbil, K., Winawer, J. & Kay, K., 2018, In: Journal of Vision. 18, 13, p. 1-22 22 p.

The impact of traditional neuroimaging methods on the spatial localization of cortical areas

Coalson, T. S., Van Essen, D. C. & Glasser, M. F., Jul 3 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 27, p. E6356-E6365

The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5–21 year olds

Somerville, L. H., Bookheimer, S. Y., Buckner, R. L., Burgess, G. C., Curtiss, S. W., Dapretto, M., Elam, J. S., Gaffrey, M. S., Harms, M. P., Hodge, C., Kandala, S., Kastman, E. K., Nichols, T. E., Schlaggar, B. L., Smith, S. M., Thomas, K. M., Yacoub, E., Van Essen, D. C. & Barch, D. M., Dec 2018, In: NeuroImage. 183, p. 456-468 13 p.

The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles

Gămănuţ, R., Kennedy, H., Toroczkai, Z., Ercsey-Ravasz, M., Van Essen, D. C., Knoblauch, K. & Burkhalter, A., Feb 7 2018, In: Neuron. 97, 3, p. 698-715.e10

The relationship between spatial configuration and functional connectivity of brain regions

Bijsterbosch, J. D., Woolrich, M. W., Glasser, M. F., Robinson, E. C., Beckmann, C. F., Van Essen, D. C., Harrison, S. J. & Smith, S. M., Feb 16 2018, In: eLife. 7, e32992.

The Zinc Finger Transcription Factor PLAGL2 Enhances Stem Cell Fate and Activates Expression of ASCL2 in Intestinal Epithelial Cells

Strubberg, A. M., Veronese Paniagua, D. A., Zhao, T., Dublin, L., Pritchard, T., Bayguinov, P. O., Fitzpatrick, J. A. J. & Madison, B. B., Aug 14 2018, In: Stem Cell Reports. 11, 2, p. 410-424 15 p.

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data

Glasser, M. F., Coalson, T. S., Bijsterbosch, J. D., Harrison, S. J., Harms, M. P., Anticevic, A., Van Essen, D. C. & Smith, S. M., Nov 1 2018, In: NeuroImage. 181, p. 692-717 26 p.

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

Schaum, N., Karkanias, J., Neff, N.F., May, A.P., Quake, S.R., Wyss-Coray, T., Darmanis, S., Batson, J., Botvinnik, O., Chen, M.B., Chen, S., Green, F., Jones, R.C., Maynard, A., Penland, L., Pisco, A.O., Sit, R.V., Stanley, G.M., Webber, J.T., Zanini, F., Baghel, A.S., Bakerman, I., Bansal, I., Berdnik, D., Bilen, B., Brownfield, D., Cain, C., Cho, M., Cirolia, G., Conley, S.D., Demers, A., Demir, K., de Morree, A., Divita, T., du Bois, H., Dulgeroff, L.B.T., Ebadi, H., Espinoza, F.H., Fish, M., Gan, Q., George, B.M., Gillich, A., Genetiano, G., Gu, X., Gulati, G.S., Hang, Y., Hosseinzadeh, S., Huang, A., Iram, T., Isobe, T., Ives, F., Kao, K.S., Karnam, G., Kershner, A.M., Kiss, B.M., Kong, W., Kumar, M.E., Lam, J.Y., Lee, D.P., Lee, S.E., Li, G., Li, Q., Liu, L., Lo, A., Lu, W., Manjunath, A., May, K.L., May, O.L., McKay, M., Metzger, R.J., Mignardi, M., Min, D., Nabhan, A.N., Ng, K.M., Noh, J., Patkar, R., Peng, W.C., Puccinelli, R., Rulifson, E.J., Sikandar, S.S., Sinha, R., Szade, K., Tan, W., Tato, C., Tellez, K., Travaglini, K.J., Tropini, C., Waldburger, L., van Weele, L.J., Wosczyna, M.N., Xiang, J., Xue, S., Youngyunpipatkul, J., Zardeneta, M.E., Zhang, F., Zhou, L., Castro, P., Croote, D., DeRisi, J.L., Kuo, C.S., Lehallier, B., Nguyen, P.K., Tan, S.Y., Wang, B.M., Yousef, H., Beachy, P.A., Chan, C.K.F., Huang, K.C., Weinberg, K., Wu, S.M., Barres, B.A., Clarke, M.F., Kim, S.K., Krasnow, M.A., Nusse, R., Rando, T.A., Sonnenburg, J., Weissman, I.L., Oct 18 2018, In: Nature. 562, 7727, p. 367-372 6 p.

An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings.Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings).

Erratum: Correction: A Mixture of Delta-Rules Approximation to Bayesian Inference in Change-Point Problems (PLoS computational biology (2013) 9 7 (e1003150))

Wilson, R. C., Nassar, M. R., Tavoni, G. & Gold, J. I., Jun 1 2018, In: PLoS computational biology. 14, 6, p. e1006210

DCC Is Required for the Development of Nociceptive Topognosis in Mice and Humans

da Silva, R. V., Johannssen, H. C., Wyss, M. T., Roome, R. B., Bourojeni, F. B., Stifani, N., Marsh, A. P. L., Ryan, M. M., Lockhart, P. J., Leventer, R. J., Richards, L. J., Rosenblatt, B., Srour, M., Weber, B., Zeilhofer, H. U. & Kania, A., Jan 30 2018, In: Cell Reports. 22, 5, p. 1105-1114 10 p.

Summary: Order and disorder in brains and behavior

Kepecs, A., 2018, In: Cold Spring Harbor symposia on quantitative biology. 83, p. 219-225 7 p.

An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings.Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 – Proceedings).

DCC mutation update: Congenital mirror movements, isolated agenesis of the corpus callosum, and developmental split brain syndrome

Marsh, A.P.L., Edwards, T.J., Galea, C., Cooper, H.M., Engle, E.C., Jamuar, S.S., Méneret, A., Moutard, M., Nava, C., Rastetter, A., Robinson, G., Rouleau, G., Roze, E., Spencer-Smith, M., Trouillard, O., Billette de Villemeur, T., Walsh, C.A., Yu, T.W., Heron, D., Sherr, E.H., Richards, L.J., Depienne, C., Leventer, R.J., Lockhart, P.J., Jan 2018, In: Human mutation. 39, 1, p. 23-39 17 p.

A genetic variant of the sperm-specific SLO3 K⁺ channel has altered pH and Ca²⁺ sensitivities

Geng, Y., Ferreira, J. J., Dzikunu, V., Butler, A., Lybaert, P., Yuan, P., Magleby, K. L., Salkoff, L. & Santi, C. M., May 26 2017, In: Journal of Biological Chemistry. 292, 21, p. 8978-8987 10 p.

A laminar organization for selective cortico-cortical communication

D’Souza, R. D. & Burkhalter, A., Aug 22 2017, In: Frontiers in Neuroanatomy. 11, 71.

A murine herpesvirus closely related to ubiquitous human herpesviruses causes T-cell depletion

Patel, S. J., Zhao, G., Penna, V. R., Park, E., Lauron, E. J., Harvey, I. B., Beatty, W. L., Plougastel-Douglas, B., Poursine-Laurent, J., Fremont, D. H., Wang, D. & Yokoyama, W. M., May 1 2017, In: Journal of virology. 91, 9, e02463-16.

Anterior cingulate is a source of valence-specific information about value and uncertainty

Monosov, I. E., Dec 1 2017, In: Nature communications. 8, 1, 134.

A Series of Suppressive Signals within the Drosophila Circadian Neural Circuit Generates Sequential Daily Outputs

Liang, X., Holy, T. E. & Taghert, P. H., Jun 21 2017, In: Neuron. 94, 6, p. 1173-1189.e4

A single transcription factor is sufficient to induce and maintain secretory cell architecture

Lo, H. Y. G., Jin, R. U., Sibbel, G., Liu, D., Karki, A., Joens, M. S., Madison, B. B., Zhang, B., Blanc, V., Fitzpatrick, J. A. J., Davidson, N. O., Konieczn, S. F. & Mills, J. C., Jan 15 2017, In: Genes and Development. 31, 2, p. 154-171 18 p.

Best practices in data analysis and sharing in neuroimaging using MRI

Nichols, T. E., Das, S., Eickhoff, S. B., Evans, A. C., Glatard, T., Hanke, M., Kriegeskorte, N., Milham, M. P., Poldrack, R. A., Poline, J. B., Proal, E., Thirion, B., Van Essen, D. C., White, T. & Yeo, B. T. T., Feb 23 2017, In: Nature neuroscience. 20, 3, p. 299-303 5 p.

Bone-induced expression of integrin b3 enables targeted nanotherapy of breast cancer metastases

Ross, M. H., Esser, A. K., Fox, G. C., Schmieder, A. H., Yang, X., Hu, G., Pan, D., Su, X., Xu, Y., Novack, D. V., Walsh, T., Colditz, G. A., Lukaszewicz, G. H., Cordell, E., Novack, J., Fitzpatrick, J. A. J., Waning, D. L., Mohammad, K. S., Guise, T. A., Lanza, G. M. Weilbaecher, K. N., In: Cancer research. 77, 22, p. 6299-6312 14 p.

Catheterization alters bladder ecology to potentiate Staphylococcus aureus infection of the urinary tract

Walker, J. N., Flores-Mireles, A. L., Pinkner, C. L., Schreiber, H. L., Joens, M. S., Park, A. M., Potretzke, A. M., Bauman, T. M., Pinkner, J. S., Fitzpatrick, J. A. J., Desai, A., Caparon, M. G. & Hultgren, S. J., Oct 10 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 41, p. E8721-E8730

Dedicated hippocampal inhibitory networks for locomotion and immobility

Arriaga, M. & Han, E. B., Sep 20 2017, In: Journal of Neuroscience. 37, 38, p. 9222-9238 17 p.

Delayed Otolith Development Does Not Impair Vestibular Circuit Formation in Zebrafish

Roberts, R., Elsner, J. & Bagnall, M. W., Jun 1 2017, In: JARO – Journal of the Association for Research in Otolaryngology. 18, 3, p. 415-425 11 p.

Deletion of cytosolic gating ring decreases gate and voltage sensor coupling in BK channels

Zhang, G., Geng, Y., Jin, Y., Shi, J., McFarland, K., Magleby, K. L., Salkoff, L. & Cui, J., Mar 6 2017, In: The Journal of general physiology. 149, 3, p. 373-387 15 p.

EJCB – Molecular basis of protein fates in the secretory and endocytic pathways, and beyond

Couture, F., Jansen, A. M., Taghert, P. & Brix, K., Aug 2017, In: European journal of cell biology. 96, 5, p. 369-371 3 p.

Enhanced sleep reverses memory deficits and underlying pathology in drosophila models of Alzheimer’s disease

Dissel, S., Klose, M., Donlea, J., Cao, L., English, D., Winsky-Sommerer, R., van Swinderen, B. & Shaw, P. J., 2017, In: Neurobiology of Sleep and Circadian Rhythms. 2, p. 15-26 12 p.

Facing the facts: The Runx2 gene is associated with variation in facial morphology in primates

Ritzman, T. B., Banovich, N., Buss, K. P., Guida, J., Rubel, M. A., Pinney, J., Khang, B., Ravosa, M. J. & Stone, A. C., Oct 2017, In: Journal of Human Evolution. 111, p. 139-151 13 p.

GABA-B controls persistent Na⁺ current and coupled Na⁺-activated K⁺ current

Li, P., Stewart, R., Butler, A., Gonzalez-Cota, A. L., Harmon, S. & Salkoff, L., 2017, In: eNeuro. 4, 3, e0114-17.2017.

Ghosts in the Machine II: Neural correlates of memory interference from the previous trial

Papadimitriou, C., White, R. L. & Snyder, L. H., 2017, In: Cerebral Cortex. 27, 4, p. 2513-2527 15 p.

Group and individual variability in mouse pup isolation calls recorded on the same day show stability

Barnes, T. D., Rieger, M. A., Dougherty, J. D. & Holy, T. E., Dec 15 2017, In: Frontiers in Behavioral Neuroscience. 11, 243.

HID-1 controls formation of large dense core vesicles by influencing cargo sorting and trans-Golgi network acidification

Hummer, B. H., De Leeuw, N. F., Burns, C., Chen, L., Joens, M. S., Hosford, B., Fitzpatrick, J. A. J. & Asensio, C. S., Dec 2017, In: Molecular biology of the cell. 28, 26, p. 3870-3880 11 p.

Identification of axon growth promoters in the secretome of the deer antler velvet

Pita-Thomas, W., Barroso-García, G., Moral, V., Hackett, A. R., Cavalli, V. & Nieto-Diaz, M., Jan 6 2017, In: Neuroscience. 340, p. 333-344 12 p.

Identification of genes that maintain behavioral and structural plasticity during sleep loss

Seugnet, L., Dissel, S., Thimgan, M., Cao, L. & Shaw, P. J., Oct 23 2017, In: Frontiers in Neural Circuits. 11, 79.

Improved tractography using asymmetric fibre orientation distributions

Bastiani, M., Cottaar, M., Dikranian, K., Ghosh, A., Zhang, H., Alexander, D. C., Behrens, T. E., Jbabdi, S. & Sotiropoulos, S. N., Sep 2017, In: NeuroImage. 158, p. 205-218 14 p

Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

Zhao, G., Vatanen, T., Droit, L., Park, A., Kostic, A. D., Poon, T. W., Vlamakis, H., Siljander, H., Härkönen, T., Hämäläinen, A. M., Peet, A., Tillmann, V., Ilonen, J., Wang, D., Knip, M., Xavier, R. J. & Virgin, H. W., Jul 25 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 30, p. E6166-E6175

Isolation of a simian immunodeficiency virus from a malbrouck (Chlorocebus cynosuros)

Carr, M., Kawaguchi, A., Sasaki, M., Gonzalez, G., Ito, K., Thomas, Y., Hang’ombe, B. M., Mweene, A. S., Zhao, G., Wang, D., Orba, Y., Ishii, A. & Sawa, H., Feb 1 2017, In: Archives of Virology. 162, 2, p. 543-548 6 p.

Knockout of lysosomal enzyme-targeting gene causes abnormalities in mouse pup isolation calls

Barnes, T. D. & Holy, T. E., Jan 4 2017, In: Frontiers in Behavioral Neuroscience. 10, 237.

Mechanisms Associated with Activation of Intracellular Metabotropic Glutamate Receptor, mGluR5

Jong, Y. J. I. & O’Malley, K. L., Jan 1 2017, In: Neurochemical Research. 42, 1, p. 166-172 7 p.

Optimal coding and neuronal adaptation in economic decisions

Rustichini, A., Conen, K. E., Cai, X. & Padoa-Schioppa, C., Dec 1 2017, In: Nature communications. 8, 1, 1208.

Orbitofrontal Cortex: A Neural Circuit for Economic Decisions

Padoa-Schioppa, C. & Conen, K. E., Nov 15 2017, In: Neuron. 96, 4, p. 736-754 19 p.

Oscillatory brain activity in spontaneous and induced sleep stages in flies

Yap, M. H. W., Grabowska, M. J., Rohrscheib, C., Jeans, R., Troup, M., Paulk, A. C., Van Alphen, B., Shaw, P. J. & Van Swinderen, B., Dec 1 2017, In: Nature communications. 8, 1, 1815.

Reward Size Informs Repeat-Switch Decisions and Strongly Modulates the Activity of Neurons in Parietal Cortex

Kubanek, J. & Snyder, L. H., Jan 1 2017, In: Cerebral Cortex. 27, 1, p. 447-459 13 p.

RNF8/UBC13 ubiquitin signaling suppresses synapse formation in the mammalian brain

Valnegri, P., Huang, J., Yamada, T., Yang, Y., Mejia, L. A., Cho, H. Y., Oldenborg, A. & Bonni, A., Dec 1 2017, In: Nature communications. 8, 1, 1271.

Sequences within the C terminus of the metabotropic glutamate receptor 5 (mGluR5) are responsible for inner nuclear membrane localization

Sergin, I., Jong, Y. J. I., Harmon, S. K., Kumar, V. & O’Malley, K. L., Mar 3 2017, In: Journal of Biological Chemistry. 292, 9, p. 3637-3655 19 p.

Statoviruses, A novel taxon of RNA viruses present in the gastrointestinal tracts of diverse mammals

Janowski, A. B., Krishnamurthy, S. R., Lim, E. S., Zhao, G., Brenchley, J. M., Barouch, D. H., Thakwalakwa, C., Manary, M. J., Holtz, L. R. & Wang, D., Apr 1 2017, In: Virology. 504, p. 36-44 9 p.

Targeting OSMR in glioma stem cells

Mohan, S., Bonni, A. & Jahani-Asl, A., 2017, In: Oncotarget. 8, 10, p. 16103-16104 2 p.

The autism-linked UBE3A T485A mutant E3 ubiquitin ligase activates the Wnt/β-catenin pathway by inhibiting the proteasome

Yi, J. J., Paranjape, S. R., Walker, M. P., Choudhury, R., Wolter, J. M., Fragola, G., Emanuele, M. J., Major, M. B. & Zylka, M. J., Jul 21 2017, In: Journal of Biological Chemistry. 292, 30, p. 12503-12515 13 p.

The Brain Analysis Library of Spatial maps and Atlases (BALSA) database

Van Essen, D. C., Smith, J., Glasser, M. F., Elam, J., Donahue, C. J., Dierker, D. L., Reid, E. K., Coalson, T. & Harwell, J., Jan 1 2017, In: NeuroImage. 144, p. 270-274 5 p.

The heritability of multi-modal connectivity in human brain activity

Colclough, G. L., Smith, S. M., Nichols, T. E., Winkler, A. M., Sotiropoulos, S. N., Glasser, M. F., Van Essen, D. C. & Woolrich, M. W., Jul 26 2017, In: eLife. 6, e20178

The performance of heat-treated silcrete backed pieces in actualistic and controlled complex projectile experiments

Schoville, B. J., Wilkins, J., Ritzman, T., Oestmo, S. & Brown, K. S., Aug 2017, In: Journal of Archaeological Science: Reports. 14, p. 302-317 16 p.

The predictive nature of transcript expression levels on protein expression in adult human brain

Bauernfeind, A. L. & Babbitt, C. C., Apr 24 2017, In: BMC genomics. 18, 1, 322.

Using rotary shadow electron microscopy to characterize semaphorin-mediated growth cone collapse

Bridgman, P. C., 2017, In: Methods in Molecular Biology. 1493, p. 185-194 10 p.

VirusSeeker, a computational pipeline for virus discovery and virome composition analysis

Zhao, G., Wu, G., Lim, E. S., Droit, L., Krishnamurthy, S., Barouch, D. H., Virgin, H. W. & Wang, D., Mar 1 2017, In: Virology. 503, p. 21-30 10 p.

The convergent roles of the nuclear factor I transcription factors in development and cancer

Chen, K. S., Lim, J. W. C., Richards, L. J. & Bunt, J., Dec 1 2017, In: Cancer Letters. 410, p. 124-138 15 p.

Patterns of transcriptional parallelism and variation in the developing olfactory system of Drosophila species

Wern Pan, J., Li, Q., Barish, S., Okuwa, S., Zhao, S., Soeder, C., Kanke, M., Jones, C. D. & Volkan, P. C., Dec 1 2017, In: Scientific reports. 7, 1, 8804.

Functional networks from inverse modeling of neural population activity

Cocco, S., Monasson, R., Posani, L. & Tavoni, G., Jun 2017, In: Current Opinion in Systems Biology. 3, p. 103-110 8 p.

GDF15 is elevated in mice following retinal ganglion cell death and in glaucoma patients

Ban, N., Siegfried, C. J., Lin, J. B., Shui, Y. B., Sein, J., Pita-Thomas, W., Sene, A., Santeford, A., Gordon, M., Lamb, R., Dong, Z., Kelly, S. C., Cavalli, V., Yoshino, J. & Apte, R. S., May 4 2017, In: JCI Insight. 2, 9

Reducing the burden of neurological disease and mental illness

Double, K. L. & Richards, L. J., May 1 2017, In: Medical Journal of Australia. 206, 8, p. 341-342 2 p.

Transcriptional profiling of olfactory system development identifies distal antenna as a regulator of subset of neuronal fates

Barish, S., Li, Q., Pan, J. W., Soeder, C., Jones, C. & Volkan, P. C., Jan 19 2017, In: Scientific reports. 7, 40873.

A decade of the anaphase-promoting complex in the nervous system

Huang, J. & Bonni, A., Mar 15 2016, In: Genes and Development. 30, 6, p. 622-638 17 p.

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

Monaco, C. L., Gootenberg, D. B., Zhao, G., Handley, S. A., Ghebremichael, M. S., Lim, E. S., Lankowski, A., Baldridge, M. T., Wilen, C. B., Flagg, M., Norman, J. M., Keller, B. C., Luévano, J. M., Wang, D., Boum, Y., Martin, J. N., Hunt, P. W., Bangsberg, D. R., Siedner, M. J., Kwon, D. S., Virgin, S., Mar 9 2016, In: Cell Host and Microbe. 19, 3, p. 311-322 12 p.

A multi-modal parcellation of human cerebral cortex

Glasser, M. F., Coalson, T. S., Robinson, E. C., Hacker, C. D., Harwell, J., Yacoub, E., Ugurbil, K., Andersson, J., Beckmann, C. F., Jenkinson, M., Smith, S. M. & Van Essen, D. C., Aug 3 2016, In: Nature. 536, 7615, p. 171-178 8 p.

A Mutation Associated with Stuttering Alters Mouse Pup Ultrasonic Vocalizations

Barnes, T. D., Wozniak, D. F., Gutierrez, J., Han, T. U., Drayna, D. & Holy, T. E., Apr 25 2016, In: Current Biology. 26, 8, p. 1009-1018 10 p.

Chromatin remodeling inactivates Activity genes and regulates neural coding

Yang, Y., Yamada, T., Hill, K. K., Hemberg, M., Reddy, N. C., Cho, H. Y., Guthrie, A. N., Oldenborg, A., Heiney, S. A., Ohmae, S., Medina, J. F., Holy, T. E. & Bonni, A., Jul 15 2016, In: Science. 353, 6296, p. 300-306 7 p.

Comment on “principles of connectivity among morphologically defined cell types in adult neocortex”

Barth, A., Burkhalter, A., Callaway, E. M., Connors, B. W., Cauli, B., DeFelipe, J., Feldmeyer, D., Freund, T., Kawaguchi, Y., Kisvarday, Z., Kubota, Y., McBain, C., Oberlaender, M., Rossier, J., Rudy, B., Staiger, J. F., Somogyi, P., Tamas, G. & Yuste, R., Sep 9 2016, In: Science. 353, 6304, 1108-a.

Comparison of cortical folding measures for evaluation of developing human brain

Shimony, J. S., Smyser, C. D., Wideman, G., Alexopoulos, D., Hill, J., Harwell, J., Dierker, D., Van Essen, D. C., Inder, T. E. & Neil, J. J., Jan 15 2016, In: NeuroImage. 125, p. 780-790 11 p

Complexities of X chromosome inactivation status in female human induced pluripotent stem cells – A brief review and scientific update for autism research

Dandulakis, M. G., Meganathan, K., Kroll, K. L., Bonni, A. & Constantino, J. N., Jun 9 2016, In: Journal of neurodevelopmental disorders. 8, 1, 22.

ConnectomeDB-Sharing human brain connectivity data

Hodge, M. R., Horton, W., Brown, T., Herrick, R., Olsen, T., Hileman, M. E., McKay, M., Archie, K. A., Cler, E., Harms, M. P., Burgess, G. C., Glasser, M. F., Elam, J. S., Curtiss, S. W., Barch, D. M., Oostenveld, R., Larson-Prior, L. J., Ugurbil, K., Van Essen, D. C. & Marcus, D. S., Jan 1 2016, In: NeuroImage. 124, p. 1102-1107 6 p.

DNA methylation in the gene body influences MeCP2-mediated gene repression

Kinde, B., Wu, D. Y., Greenberg, M. E. & Gabel, H. W., Dec 27 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 52, p. 15114-15119 6 p.

Evolutionary Specializations of Human Brain Microstructure

Sherwood, C. C., Bauernfeind, A. L., Verendeev, A., Raghanti, M. A. & Hof, P. R., Jan 1 2016, Evolution of Nervous Systems: Second Edition.Elsevier Inc., Vol. 4-4. p. 121-139 19 p.

Experience-Dependent Plasticity Drives Individual Differences in Pheromone-Sensing Neurons

Xu, P. S., Lee, D. & Holy, T. E., Aug 17 2016, In: Neuron. 91, 4, p. 878-892 15 p.

Functional PDF Signaling in the Drosophila Circadian Neural Circuit Is Gated by Ral A-Dependent Modulation

Klose, M., Duvall, L. B., Li, W., Liang, X., Ren, C., Steinbach, J. H. & Taghert, P. H., May 18 2016, In: Neuron. 90, 4, p. 781-794 14 p.

Gpr126/Adgrg6 has Schwann cell autonomous and nonautonomous functions in peripheral nerve injury and repair

Mogha, A., Harty, B. L., Carlin, D., Joseph, J., Sanchez, N. E., Suter, U., Piao, X., Cavalli, V. & Monk, K. R., Dec 7 2016, In: Journal of Neuroscience. 36, 49, p. 12351-12367 17 p.

Hyperexpansion of RNA Bacteriophage Diversity

Krishnamurthy, S. R., Janowski, A. B., Zhao, G., Barouch, D. & Wang, D., Mar 24 2016, In: PLoS biology. 14, 3, e1002409.

Internal carotid arterial canal size and scaling in Euarchonta: Re-assessing implications for arterial patency and phylogenetic relationships in early fossil primates

Boyer, D. M., Kirk, E. C., Silcox, M. T., Gunnell, G. F., Gilbert, C. C., Yapuncich, G. S., Allen, K. L., Welch, E., Bloch, J. I., Gonzales, L. A., Kay, R. F. & Seiffert, E. R., Aug 1 2016, In: Journal of Human Evolution. 97, p. 123-144 22 p.

Intracellular mGluR5 plays a critical role in neuropathic pain

Vincent, K., Cornea, V. M., Jong, Y. J. I., Laferriere, A., Kumar, N., Mickeviciute, A., Fung, J. S. T., Bandegi, P., Ribeiro-Da-Silva, A., O’Malley, K. L. & Coderre, T. J., Feb 3 2016, In: Nature communications. 7, 10604.

Mandibular ramus shape of Australopithecus sediba suggests a single variable species

Ritzman, T. B., Terhune, C. E., Gunz, P. & Robinson, C. A., Nov 1 2016, In: Journal of Human Evolution. 100, p. 54-64 11 p.

Multiple mechanisms for processing reward uncertainty in the primate basal forebrain

Ledbetter, N. M., Chen, C. D. & Monosov, I. E., Jul 27 2016, In: Journal of Neuroscience. 36, 30, p. 7852-7864 13 p.

Nerve growth factor stimulates axon outgrowth through negative regulation of growth cone actomyosin restraint of microtubule advance

Turney, S. G., Ahmed, M., Chandrasekar, I., Wysolmerski, R. B., Goeckeler, Z. M., Rioux, R. M., Whitesides, G. M. & Bridgman, P. C., Feb 1 2016, In: Molecular biology of the cell. 27, 3, p. 500-517 18 p.

Neuronal remapping and circuit persistence in economic decisions

Xie, J. & Padoa-Schioppa, C., Apr 26 2016, In: Nature neuroscience. 19, 6, p. 855-861 7 p.

Neurons in the primate dorsal striatum signal the uncertainty of object-reward associations

White, J. K. & Monosov, I. E., Sep 14 2016, In: Nature communications. 7, 12735.

Neuroscience: Flipping the sleep switch

Dissel, S. & Shaw, P. J., Aug 3 2016, In: Nature. 536, 7616, p. 278-280 3 p.

Olfactory bulb connectomics: a silver lining

Holy, T. E., May 26 2016, In: Nature neuroscience. 19, 6, p. 767-768 2 p.

Oxygen Level and LFP in Task-Positive and Task-Negative Areas: Bridging BOLD fMRI and Electrophysiology

Bentley, W. J., Li, J. M., Snyder, A. Z., Raichle, M. E. & Snyder, L. H., Jan 1 2016, In: Cerebral Cortex. 26, 1, p. 346-357 12 p.

Parcellations and connectivity patterns in human and macaque cerebral cortex

Van Essen, D. C., Donahue, C., Dierker, D. L. & Glasser, M. F., 2016, Research and Perspectives in Neurosciences. 9783319277769 ed. Springer Verlag, p. 89-106 18 p. (Research and Perspectives in Neurosciences; no. 9783319277769).

Pathogenesis of Börjeson-Forssman-Lehmann syndrome: Insights from PHF6 function

Jahani-Asl, A., Cheng, C., Zhang, C. & Bonni, A., Dec 1 2016, In: Neurobiology of Disease. 96, p. 227-235 9 p.

Recruitment of inhibition and excitation across mouse visual cortex depends on the hierarchy of interconnecting areas

D’Souza, R. D., Meier, A. M., Bista, P., Wang, Q. & Burkhalter, A., Sep 26 2016, In: eLife. 5, September2016, e19332.

Regenerated sciatic nerve axons stimulated through a chronically implanted macro-sieve electrode

MacEwan, M. R., Zellmer, E. R., Wheeler, J. J., Burton, H. & Moran, D. W., 2016, In: Frontiers in Neuroscience. 10, DEC, 557.

Region-Specific Summation Patterns Inform the Role of Cortical Areas in Selecting Motor Plans

Chang, S. W. C., Calton, J. L., Lawrence, B. M., Dickinson, A. R. & Snyder, L. H., May 1 2016, In: Cerebral Cortex. 26, 5, p. 2154-2166 13 p.

Signaling over distances

Saito, A. & Cavalli, V., Feb 2016, In: Molecular and Cellular Proteomics. 15, 2, p. 382-393 12 p.

SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination

Handley, S. A., Desai, C., Zhao, G., Droit, L., Monaco, C. L., Schroeder, A. C., Nkolola, J. P., Norman, M. E., Miller, A. D., Wang, D., Barouch, D. H. & Virgin, H. W., Mar 9 2016, In: Cell Host and Microbe. 19, 3, p. 323-335 13 p.

Sleep and memory formation in Drosophila

Dissel, S. & Shaw, P. J., Jan 1 2016, The Curated Reference Collection in Neuroscience and Biobehavioral Psychology.Elsevier Science Ltd., p. 517-527 11 p.

SLO2 Channels are inhibited by all divalent cations that activate SLO1 K- channels

Budelli, G., Sun, Q., Ferreira, J., Butler, A., Santi, C. M. & Salkoff, L., Apr 1 2016, In: Journal of Biological Chemistry. 291, 14, p. 7347-7356 10 p.

Spatial Embedding and Wiring Cost Constrain the Functional Layout of the Cortical Network of Rodents and Primates

Horvát, S., Gămănuț, R., Ercsey-Ravasz, M., Magrou, L., Gămănuț, B., Van Essen, D. C., Burkhalter, A., Knoblauch, K., Toroczkai, Z. & Kennedy, H., Jul 21 2016, In: PLoS biology. 14, 7, e1002512.

Surgical extraction of human dorsal root ganglia from organ donors and preparation of primary sensory neuron cultures

Valtcheva, M. V., Copits, B. A., Davidson, S., Sheahan, T. D., Pullen, M. Y., McCall, J. G., Dikranian, K. & Gereau, R. W., Oct 1 2016, In: Nature Protocols. 11, 10, p. 1877-1888 12 p.

Synchronous drosophila circadian pacemakers display nonsynchronous Ca²⁺ rhythms in vivo

Liang, X., Holy, T. E. & Taghert, P. H., Feb 26 2016, In: Science. 351, 6276, p. 976-981 6 p.

The dynamic nature of value-based decisions

Conen, K. E. & Padoa-Schioppa, C., Jul 1 2016, In: Nature neuroscience. 19, 7, p. 866-867 2 p.

The Human Connectome Project’s neuroimaging approach

Glasser, M. F., Smith, S. M., Marcus, D. S., Andersson, J. L. R., Auerbach, E. J., Behrens, T. E. J., Coalson, T. S., Harms, M. P., Jenkinson, M., Moeller, S., Robinson, E. C., Sotiropoulos, S. N., Xu, J., Yacoub, E., Ugurbil, K. & Van Essen, D. C., Sep 1 2016, In: Nature neuroscience. 19, 9, p. 1175-1187 13 p.

The network for intracortical communication in mouse visual cortex

Burkhalter, A., 2016, Research and Perspectives in Neurosciences. 9783319277769 ed. Springer Verlag, p. 31-43 13 p. (Research and Perspectives in Neurosciences; no. 9783319277769).

The splice isoforms of the Drosophila ecdysis triggering hormone receptor have developmentally distinct roles

Diao, F., Mena, W., Shi, J., Park, D., Diao, F., Taghert, P., Ewer, J. & White, B. H., Jan 2016, In: Genetics. 202, 1, p. 175-189 15 p.

Using diffusion tractography to predict cortical connection strength and distance: A quantitative comparison with tracers in the monkey

Donahue, C. J., Sotiropoulos, S. N., Jbabdi, S., Hernandez-Fernandez, M., Behrens, T. E., Dyrby, T. B., Coalson, T., Kennedy, H., Knoblauch, K., Van Essen, D. C. & Glasser, M. F., Jun 22 2016, In: Journal of Neuroscience. 36, 25, p. 6758-6770 13 p.

Wear and its effects on dental topography measures in howling monkeys (Alouatta palliata)

Pampush, J. D., Spradley, J. P., Morse, P. E., Harrington, A. R., Allen, K. L., Boyer, D. M. & Kay, R. F., Dec 1 2016, In: American Journal of Physical Anthropology. 161, 4, p. 705-721 17 p.

Functional characterization of the dural sinuses as a neuroimmune interface

Rustenhoven, J., Drieu, A., Mamuladze, T., de Lima, K. A., Dykstra, T., Wall, M., Papadopoulos, Z., Kanamori, M., Salvador, A. F., Baker, W., Lemieux, M., Da Mesquita, S., Cugurra, A., Fitzpatrick, J., Sviben, S., Kossina, R., Bayguinov, P., Townsend, R. R., Zhang, Q., Erdmann-Gilmore, P., Smirnov, I., Beatriz-Lopes, M., Herz, J., Kipnis, J., Feb 18 2021, In: Cell. 184, 4, p. 1000-1016.e27

In vivo gene delivery of STC2 promotes axon regeneration in sciatic nerves

Jeon Y, Shin JE, Kwon M, Cho E, Cavalli V, Cho Y. Feb 2021. In: Molecular Neurobiology, 58(2):750-760.